Zalophus californianus (California sea lion): 113935743
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Entry
113935743 CDS
T07874
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113935743 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zca03019
]
113935743 (EDC4)
Messenger RNA biogenesis [BR:
zca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113935743 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
113935743 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
WD40_CDC20-Fz
DUF445
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
Motif
Other DBs
NCBI-GeneID:
113935743
NCBI-ProteinID:
XP_027473930
UniProt:
A0A6J2EY07
LinkDB
All DBs
Position
17:complement(18154327..18165706)
Genome browser
AA seq
1404 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAESQRPSNAYNGDLNGLLVPDPLCSGDGT
SANKPGLRAMPPINLQEKQVICLTGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAASNGSAMVRVISVSASERTLLKGFTGSV
ADLAFAHLNSSQLACLDEAGNLFVWRLALVNGKIQEEILVHIQQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRANHSTWPVRVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRSLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGSHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVLAPLPTHT
AHEDFTFSTAFGESRPELGSDGLGSSTQGSQPDPRRIVELPAPADFLSLSSETKPKLMTP
DAFMTPSASLQQIAASPSSSSSSSSPSSSSLTAVSAMSSASAVDQSLPSRPPEELTLSPK
LQLDGSLALSSSSSSLQASPRSLLPSLLPGPADKLTPKAPGQVPTAASALSLELQEVEPL
GLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFVSSAPEGLEPDSMASAASALH
LLSPRPRPGPELGSQLGLDGGPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRET
CSSLAESPRNGLQEKHKNLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGA
KVPPPRLPAKDWKTKGSPRASPKLKRKGKKDDGDSAVGSRLMEHQVAEAPEDWPALIWQQ
QRELAELRHSQEELLQRLCSQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGG
QLQEQLTQQLSQALSSAVAGRLERSLRDEIKKTVPPCVSRSLEPVTGQLSSSVATKLTAV
EGSMKESISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQI
NDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSSSVR
AEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAA
HLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPV
LLSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEP
HNSLGKVARRLSLMLHGLVTPSLP
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
ctcaagctggaccggcccgcggggggtcccagtgcagagagccagcggccatctaatgcc
tacaatggggatctcaacgggcttcttgtcccagaccccctctgctcaggtgatggtact
tcagcaaacaagcctggtctccgggccatgccacctattaaccttcaggaaaagcaggtc
atctgcctcacaggagatgacagctctacatgcatcgggattttggccaaggaggtggag
attgtggctagcagtgactctagcatctcaagcaaagcacggggcagcaacaaggtgaaa
atccagcccgtggccaagtatgactgggaacagaaatactactacggcaacctgatagct
gtgtccaactcctttttggcttatgccattcgggctgccagcaatggctcagcgatggtg
cgggtgatcagtgtcagcgcttcagagcggaccctgctcaagggcttcacgggcagtgtg
gctgatctggcctttgcacacctcaattcctcacagctggcctgcctggatgaggcaggc
aacctgttcgtgtggcgcttggctctggtgaatggcaaaattcaagaagagatcttggtc
cacatccagcagccagagggcacaccactgaaccacttccgcaggatcatctggtgcccc
ttcatcccggaggagagtgaggactgctgtgaggagggcagccccacggtggccctgttg
cacgaggaccgggctgaggtgtgggatctggacatgctccgcgccaaccacagcacctgg
cctgtgcgtgtcagccaaatcaagcaaggcttcatcgtggtaaaaggccacagcacctgc
ctgagtgaaggggccctctcacctgatgggactgtcctggctactgcaagccatgatggc
tttgtcaagttctggcagatctacattgaggggcaggatgagccaaggtgtctgcatgaa
tggaagcctcatgatgggcggtccctttcctgcctcctattctgtgacaaccacaagaaa
caggaccctgaagtccctttctggaggttcctcatcactggtgctgaccagaatcgggag
ctcaagatgtggtgcacggtgtcctggacctgcctccagaccattcgcttctccccagat
atcttcagctcagtgagtgtgccccccagcctcaaggtttgtctggacctctcagcagaa
taccttattctcagcgatgtgcaacggaaggtcctctatgtgatggagctgctgcagaac
caggaggaaggccgtgcctgcttcagctccatctctgagttcctgctcacccatcctgtg
ctgagtttcggtatccaggtcgtgagtcgctgtcgactgcggcacactgaggtgctgcct
gccgaggaggagaatgacagcctaggggctgatgggagccacggagctggtgccatggag
tctgcagccggtgtgctcatcaaactcttttgtgtgcatactaaggccttgcaggatgtg
cagatccgtttccagccgcagttgaaccctgatgtgctggccccactccccacccacact
gcccatgaggacttcactttctccacagcatttggagagtctcggcctgaactgggctct
gacggcctggggtcatctacccaaggctcccagcccgacccccgacgcatagtggagctg
cctgcgcctgctgacttcctcagtctgagcagtgagaccaagcccaagctgatgacacct
gacgccttcatgacacctagcgcctccctgcagcagatcgctgcatcccccagcagctcc
agctccagctccagccccagctcctcctctcttacagctgtgtctgccatgagcagcgcc
tcagctgtggaccagtccttgcccagcaggccgcctgaggagctgaccttgagccccaag
ctgcagctggatggcagtctggcactgagcagcagcagcagcagcctgcaagcaagccca
cgcagcctcttgcccagcctgctcccagggccagctgacaaactgactcccaaagcacct
gggcaggtgcctactgctgcctctgcactgtccctggagctgcaggaagtggagcccctg
gggctaccccaggcttctcccagccgcacccgctcccctgatgttatctcctcagcttcc
actgccctgtcccaggacatccctgagatcgcctctgaggccctgtcccgtggttttgtc
tcctctgctcctgagggtcttgagccagacagtatggcctcagctgcctcagcgctccac
ctgctgtccccacggccccggccagggcccgagcttggctcccagcttggcctggatgga
ggccctggggatggggatcggcatagtaccccttcccttttggaggcagcattgacccag
gaggccacagcccctgacagtcaggtctggcctacggcaccagacattactcgtgagacc
tgtagcagcctagcagagagtcccaggaatggcctccaggagaagcacaagaacctggcc
ttccaccgaccaccttaccacctgctgcagcaacatgacagccaggatgccagtgctgag
caaagtgaccatgatgatgaggtggctagccttgcctctgctgcagggggctttggtgcc
aaagttccccctccacggctaccggccaaggactggaagaccaagggttctcctcgagcc
tcacccaagcttaagagaaagggcaagaaagatgacggggattcagctgtgggatcccgg
ctcatggaacaccaggtggcagaagctcctgaggactggccagcactaatttggcaacag
cagagggagctggcagagctgcggcacagccaggaagaattgctgcagcgtctttgcagc
cagcttgaaggtctgcagagcaccgtcacgggccacgtagaacgcgccctggagtcacgg
catgagcaggagcagcggcggctggagcgggcactggctgaggggcagcagcggggtggg
cagctgcaggagcagctgacccaacaactgtcccaggcactgtcttcggctgtcgctggg
cggctggagcgcagcctacgggatgagatcaagaagacggtgcctccgtgtgtctccagg
agcctggagccagtgacaggccagctgagtagctcagtggccaccaagctcacagccgtg
gagggtagcatgaaagagagtatctccaagctgctaaagtccaagaacctgacagatgcc
attgcccgagcagctgcagacacattacaggggccaatgcaggccgcctaccgtgaagcc
ttccagagtgtggtgctgccggcctttgagaagagctgccaggccatgttccaacagatc
aatgatagcttccgactgggcacgcaagagtacttgcagcagctggagagccacatgaag
agccggaaggcgcgagaacaggaggcacgggagcctgtgttagcccagctgcggggcctg
gtcagcacactgcagggcgccactgagcagatggcggccaccgtgtccagcagcgtccgg
gctgaggtgcagcaccagctgcacgtggctgtgggcagtctgcaggaatccattttagca
caggtacagcgcatcgttaagggcgaggtgagtgtagccctcaaggagcaacaggccgcc
gtgacgtctagcatcatgcaggccatgcgttcagctgctggcacgcctgtccccgctgcc
caccttgactgccaggcccagcaagcccatatcctgcagctgctgcagcagggccacctc
aatcaggccttccagcaggccctgacagctgctgacctgaacctggtgctgtatgtgtgt
gaaactgtggacccagggcaggtttttgggcagccaccctgcccactctcccagcctgtg
ctcctttccctcatccagcagctggcctctgaccttggtactcgaactgacctcaagctc
agctacctggaagaggctgtgatgcacctggaccacagtgaccccatcactcgggaccac
atgggctccgtcatggcccaggtgcgccagaagctcttccagttcctgcaggctgaacca
cacaactcacttggcaaagtggcccggcgtctcagcctcatgctgcacggtcttgtaacc
cctagcctcccttag
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integrated database retrieval system
