Zalophus californianus (California sea lion): 113936005
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Entry
113936005 CDS
T07874
Symbol
CIC
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
113936005 (CIC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zca03000
]
113936005 (CIC)
Transcription factors [BR:
zca03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
113936005 (CIC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_Cic_C
DUF4819
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
113936005
NCBI-ProteinID:
XP_027474584
UniProt:
A0A6J2F214
LinkDB
All DBs
Position
17:complement(48233728..48260483)
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AA seq
2537 aa
AA seq
DB search
MKPMKKACVGLPGSGSGGKSPPATRAKALRRRGAGEGDKPEEEDEMVQQQPPPPPGPEEA
EEGEEEESERGPGAEGLPPELPPEDPAAPGPAEDPKVEGEASRWEPSLSRKTATFKSRAP
KKKYVEEHGAGSGSSGPAGAPEERARTPEEAGALGVPPRPPTSTRSSSTDTASEHSADLE
DEAAEACGPGPWPPSGTSGGYDLRQLRSQRVLARRGDGLFLPAVVRQVRRSQDLGVQFPG
DRALTFYEGAPGGGVDVVLDATPPPGALAVGTAVCTCVEPGVAAYREGVVVEVATKPAAY
KVRLSPGPNSQPGLPAAPPQPPQLPHREPEEAVWVARSSLRLLRPPWEPEALPRKPPVGP
EEEQAEPGGVLPPCPTALDPKQPEDAEVSKISFGGNLGTCEEGEEKHPPALGTPALLPLP
PPQLLSPPPKSPAFAGPGRPGEQPSPCQEGSQAGSRSSSVASLEKGAAPAARARTPLTAA
QQKYKKGDVVCTPNGIRKKFNGKQWRRLCSRDGCMKESQRRGYCSRHLSMRTKEMEGLAD
SGPGGAGRPAGVAAREGSTEFDWGDETSRDSEASSVAARGDSRPRLVAPADLSRFEFDEC
EAAVMLVSLGSSRSGTPSFSPVSTQSPFSPAPSPSPSPLFGFRPANFSPINASPVIQRTA
VRSRHLSASTPKGGVLTPPDLGPHPPPPAPRERHSSGILPTFQTNLTFTVPISPGRRKTE
LLPHPGALGAPGAGGGGATPDFPKSDSLDSGVDSVSHTPTPSTPAGFRAVSPAVPFSRSR
QPSPLLLLPPPAGLTSDPGPSVRRVPAVQRDSPVIVRNPDVPLPSKFPGEVSTAGEARAA
GPGRGCRETPVPPGVASGKPGLPPPLPAPVPITVPPAAPTAVAQPMPTFGLASSPFQPVA
FHPSPAALLPVLVPSSYTSHPAPKKEVIMGRPGTVWTNVEPRSVAVFPWHSLVPFLAPSQ
PDPSVQPSEAQQPASHPVASTQSKEPAESAAVAHEQPPGGTGNADPGRPPGATCPESPGP
GPPHTLGVVEPGKGPPPTAEEEAPGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGK
RRTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNR
TVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLGL
AGGHKETRERSMSETGTAAAPGVSSELLSVAAQTLLSSDTKAPGSGSCGTERLHAVGGPG
SARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKTSTQYGAPGPFSASSEGG
ALAASGRPPLLPTRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDGFGATDIDLKCK
ERVTDSESGDSSGEDPEGSKGFGRKVFSPVIRSSFTHCRPPLDPEPPGPPDPPAPAFGKG
YGPTPSSSSSSSSPASSSASAATSFPLGSGTFKAQESGQGGREGPLRPPPPGAGGPVTPS
KATRFLPTDPVAFRRKRPESVGGLEPPGPSVIAAPPGGGGSVLQTLVLPPNKEEREGGGT
RMPPAPAPSLAYGAPAAPLSRPAATMVTNVVRPVSSTPVPIASKPFPTAGRAEASPNDTA
GARTEPVTGSRAPGSSPLGVSLVYSDKKSAAATSPAPHLVAGPLLGTVGKAPATVTNLLV
GTPGYGAPAPPAVQFIAQGAPGSGATTGSGAGAGSGPNGPVPLGILQPGALGKAGGITQV
QYILPTLPQQLQVAPAPAPAPGTKAAAPGGPAPTTSIRFTLPPGTSTNGKVLAATAPTPG
IPILQSVPSAPPPKAQSVSPVQAPPPGGSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLV
SPPFSVPVQNGAQPPSKIIQLTPVPVSTPSGLVPPLSPATLSGPTSQPQKVLLPSSTRIT
YVQSAGGHALPLGTSPTSSQAGTVTSYGPTSSVALGFTSLGPSGPAFVQPLLSGQAPLLA
PGQVGVSPVPSPQLPPTCTAPGGPVITAFYPGSPAPTSSAPLAQPSQAPPGLVYTVATST
TPPAATILPKGPPAPATATPAPTSPFPNATGSMTYSLVAPKAQRPTPKAPQKVKAAIASI
PVGSFEAGAPGRSGPAARQPLEPGPAREPPTPESELEGQPTTPAPPPPPETWPPTARSSP
PPPPPAEERTSTKGPEGMASKFPGSSSDWRVPGLGLESRGEPPTPPSPAPAPAPAPGGGG
GGGGGGGGGGGGGGSSEGSSGRAAGDTPERKEAAGAGKKVKVRPPPLKKTFDSVDNRVLS
EVDFEERFAELPEFRPEEVLPSPTLQSLATSPRAILGSYRKKRKNSTDLDSAPEDPTSPK
RKMRRRSSCSSEPNTPKSAKCEGDIFTFDRTGTEAEDVLGELEYEKVPYSSLRRTLDQRR
ALVMQLFQDHGFFPSAQATAAFQARYADIFPSKVCLQLKIREVRQKIMQAATPTEQPPGA
EAPLPGPPPTGTAAAPVPTPSPAGGPDPTSPGSDSGTAPAAPPLPPPPEPGPGQPGWEGP
PQPSPPPPGPSPAATGR
NT seq
7614 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaatgaagaaggcatgtgtcggcctcccaggttctggcagtggtggcaagtcc
ccaccggccacccgggccaaggccctgagacggcgaggggctggggagggcgacaagccg
gaggaggaagacgaaatggtgcagcagcagccgccgccacctccggggccagaagaggct
gaggagggtgaggaggaggagtctgagcggggccctggggctgaggggctgcccccggag
ctgccccctgaggacccggcggccccaggccctgctgaggaccccaaggtggagggggag
gcgagccgctgggagccatcactcagccgtaagacggccacgttcaagtctcgagcgccc
aagaagaagtatgtggaggagcatggagctggcagcggtagcagtgggccggccggggcc
cctgaagagcgggcacggacccctgaggaggccggcgccctgggtgtccctccacggcca
cccacctccacccgttcctcttccactgacacagccagtgagcactcagccgacctggag
gatgaggcagccgaagcttgtgggccgggcccctggcccccaagtggcaccagcggcgga
tatgacctgcggcagctgaggtcccagcgggtgctggctcggcggggagacggcctcttc
ctgccggccgtggtgcgccaggtgcgccgaagccaggacctgggggtacagttccccggg
gaccgggccctgacgttctacgagggggcacccggcggcggtgttgatgtggttttggat
gccacgccaccgccgggtgccctggcggtgggcacagctgtctgtacctgcgtggagccc
ggcgtggctgcctaccgtgagggtgtggtggtggaggtggccaccaagcccgctgcctac
aaggtccgcctgagtcccggccccaactcgcagccgggcctgccggccgccccaccacag
cccccacagctgccacaccgtgagcccgaggaggccgtgtgggtggcccgctctagcttg
cgcctgctgcggcccccctgggaacctgaggcgctgccaaggaagccccctgtgggcccc
gaagaggagcaggctgagccagggggtgtcctgcccccctgccctactgccctggacccc
aagcagcctgaggatgcggaggtgtcgaagatcagctttggtggcaacctggggacttgt
gaggagggcgaggagaagcacccgccagccctgggcaccccggccctgctcccactgccc
ccgccccagctcctgtctcccccgcccaagtccccagctttcgcgggccccggccgccct
ggcgagcagccgtcgccgtgccaggaggggagtcaggctggcagccggagcagcagcgtg
gcctctctggagaagggggctgcgccagccgcccgggcccgcacgccactgacagccgcc
cagcagaagtataagaagggggacgtggtctgcacgcccaacggaatccgcaagaaattc
aatggcaagcagtggcgccggctgtgctcccgagacggctgcatgaaggagtcgcagcgg
cggggctactgctcgcgccacctgtccatgcgaaccaaggagatggagggcctggcggac
agtggccctggtggggccgggcggccggcgggcgtggcggcgcgtgagggcagcaccgag
tttgactggggtgacgaaacatcgcgggacagtgaggccagcagcgtggcggcccgcggg
gactcgcgcccacgcctggtggctcctgctgacctgtcgcgctttgagttcgatgagtgt
gaggcggccgtgatgctggtgtcgttgggcagctctcgctctggcacgccctccttctct
cccgtgtccacgcagtcgcccttctcaccggccccatcgccctccccctcgccgctcttt
ggcttccgccccgccaacttcagccccatcaacgcctcaccagtcatccaacgcactgcc
gttcgcagccgccacctgagcgccagcaccccgaaggggggcgtgctgacaccaccggac
ctgggcccccacccaccgccgcctgcccccagagagcgccactcttctggcatcctaccc
accttccagaccaacctgaccttcaccgtgcccatcagccccgggcggaggaagacagag
ctgctgccccacccaggggccttgggggcgcccggtgcgggcggcggaggagccaccccg
gacttccccaagagcgacagcctagactccggtgtggactcggtgtcccacacgcctaca
ccctccacaccggctggcttccgggctgtgtcacccgccgtgcccttctcccgctcccgc
cagccctcgccattgctgctgttgcccccgcctgctggcctgacctcggaccctgggccc
tccgtgcgcagggttcctgctgtgcagcgggactcacccgtcattgttcgcaaccccgac
gtgccgctgccctccaaattccctggggaggtgagcactgctggcgaggcgcgggcagcg
ggacctgggcggggctgccgagagaccccagtgccccctggggtggccagtgggaagcct
ggcctgcccccacctctgccagcccccgtgcccatcaccgtgcctccagccgcgccgact
gccgtggcccagccgatgcccaccttcggcctggcttcttcacccttccagccggtggcc
ttccacccctcacctgctgccctattgcccgtcctggtgcccagcagctacaccagccat
cctgcccccaaaaaggaagtcatcatgggccgacctgggacagtgtggacaaatgtggaa
cctcgctctgttgccgtgttcccctggcactccttagtcccctttctggcccccagccag
cccgacccctctgtgcagccaagtgaggcccagcaacctgccagccacccagtggcctcc
acccagagcaaagaacctgctgagtccgcggctgtcgctcacgagcagccaccaggtggt
acagggaatgctgatcccgggcggccccctggagccacctgccctgagagcccagggcct
ggaccaccccacactttgggggtggtggaacctggaaagggtccccctcctactgctgag
gaggaggcccctggccctccaggagagccccggctggacagcgagacagagagtgaccat
gatgatgccttcctgtccatcatgtctcctgagatccagttgcccctgccacccgggaaa
cgccggacacagtccctcagtgcgctgccaaaggaacgagactcctcttcagagaaggat
ggacgcagccccaacaagcgggagaaggaccatatccggcggcccatgaacgccttcatg
atcttcagcaagcggcaccgggccctggtccaccagcgtcaccccaaccaggacaaccgg
accgtcagcaagatcctgggcgagtggtggtacgccctggggcccaaggagaagcagaag
taccatgacctggccttccaggtgaaagaggcccactttaaggctcatccagactggaag
tggtgcaacaaggaccggaagaagtccagctcagaggccaagcccacgagcctggggctg
gcaggcgggcacaaggagacccgggagcggagcatgtcagagacagggactgccgctgcc
cctggagtgtcctcggaactcctgtccgttgcagcccagacactcttgagctcggatacc
aaggctccggggagcggctcctgtggaacagagcgtctgcatgcagtggggggacctggc
tcagcccggccccgagccttctcccacagtggggtccacagcctggatggtggggaagta
gatagccaggcactacaggaactgactcagatggtgtctggccctgcatcctattctggt
ccaaagacttccacccagtatggggctccaggccccttctcagcctccagtgagggaggt
gccctggcggccagtgggcgacccccgctgctgcccacccgggcctcccgttcccagcgt
gcagccagtgaggacatgaccagtgacgaggaacgcatggtcatctgtgaggaggaggga
gacgatgatgtcattgctgacgacggctttggcgccactgatattgacctcaagtgcaag
gagcgggtgactgacagcgagagcggagatagctctggggaggacccagagggcagcaag
ggctttggccggaaggtgttctcgcctgtgatccgttcctcctttacccactgccgccca
ccgctggaccctgagcccccagggcccccggatccaccagctccagcctttggcaaaggc
tacgggcccaccccatcctcctcctcctcctcgtcctcacctgcctcctcctcagcctct
gccgccacctccttccccctgggctcagggaccttcaaggcccaggagtcagggcagggc
ggcagggaaggcccactacggcccccacctcctggggctgggggtccggtgacaccttcc
aaggccacccggttcctcccaacggatcctgttgccttccggcgcaagagacctgaaagt
gtgggaggcctggagccaccgggcccctcggtcattgcggcacctcctggcgggggagga
agtgtcctgcagacgctggtcctgcccccaaataaggaggaacgggaaggcggcggaacc
cgcatgcccccggccccagccccatcactggcctatggggccccagcagcccccctgtcc
cgcccagctgctaccatggtcaccaacgtggtgcggcctgtcagtagcactcctgtgccc
atcgcctctaagcccttccccaccgctggccgggccgaggcatctccaaatgacacagca
ggtgccaggactgagccggtcacagggtcccgggcacctgggagctccccgctgggcgta
agcttagtgtattcggacaagaagtcagcagcagccacctcgccggccccacatctggtg
gctgggcccctcctgggcactgtggggaaggcccctgccacagtcaccaacctgctggtg
ggcacacccggttatggggccccggcgccccctgctgttcagttcatagcccagggggcc
cctggcagtggggccaccacaggctcaggagcaggtgctgggagtggccccaatgggcca
gtgcccctgggcatcctgcagccaggtgccttgggcaaggctgggggaatcacccaggtg
cagtacatcctgcccacgctgccccagcagcttcaggtggcgcctgccccagcaccagcc
cctgggaccaaggcagcagctcctggtggccccgcacccaccaccagcatccgtttcacc
ctcccaccgggcacctccaccaacggcaaggttctggcggccaccgcgcccactcctggc
atccccatcctgcaatctgtaccctccgccccgccccccaaagcccaatcggtttctcct
gtgcaggccccaccgccgggcggctcagcccagctgctacctgggaaggtcctggtgccc
ctggcggcccctagcatgtcggtgcggggcggaggggctggccagccactgcccctggtg
agcccgccgttttcggtacctgtgcagaatggggcccagccacccagcaagatcatccag
ctgactccggtgcccgtgagcacacccagcggcctggtgccgcccctcagcccagccaca
ctctctggacccacctcgcagcctcagaaggtcctgctaccctcctccaccagaatcacc
tacgtgcagtcggcgggtgggcacgcgttgcccctgggcaccagccctacgtccagccag
gctggaacagtcacctcgtatgggcccacaagctcggtagccctaggcttcacctcgctg
gggcccagcggacccgcctttgtgcagcccctactttcaggccaagccccgctgctggct
cctggccaggtgggcgtgtcacccgtgcccagtccccagctgccgcccacctgcacggcc
cccggaggtcccgttatcacggcgttttaccctggcagccctgcacccacctcctcagca
cccctggcccagccatcccaggcgcccccaggcctggtctacactgtggccactagcacc
accccacctgctgccaccatcctgcccaagggcccaccagcccctgccactgccaccccg
gcccccaccagccctttccctaatgccacaggctccatgacctacagcttagtggccccc
aaggcccagcggcccacccccaaggccccccagaaagtgaaggcggccatcgccagcatt
cccgtgggttcctttgaggcaggtgcccctgggcggtcaggccctgcagcccggcagccc
ttggagcctggcccagcccgggagccccctacccccgaatctgagctcgaggggcagcct
acgacaccggcccctccaccacccccagagacctggcctcccacagcccggagcagcccc
ccgccgcccccacctgctgaggagcgaacaagcaccaagggccctgagggcatggccagc
aaattccccggctcgtcttcagactggcgagtcccagggctgggtctggagagccgcggg
gagcctcccacccctcccagcccagcgccagctccagccccagcccctggcggcggcggc
ggcggtggcggtggcggcggcggcggcggcggcggcggcggcagcagtgagggcagcagt
gggagggcagctggggacacccccgagcgcaaggaggccgctggtgccggcaagaaggtg
aaggtgcggcccccgcccctgaagaagacctttgactctgtggacaacagggtcctgtcg
gaggtggacttcgaagagcgctttgctgagctgcctgagttccggcctgaggaggtgctg
ccctcgccgaccctgcagtctctggccacgtcgccccgggccatcctgggctcctaccgc
aagaagaggaagaactccaccgacctggactcagcccccgaggaccccacctcgcccaag
cgcaagatgaggagacgctccagttgcagctccgagcccaacacccctaagagtgccaag
tgcgagggggacatcttcacctttgaccgcacaggtacggaagccgaggatgtgctcggg
gaactggagtacgagaaggtgccatactcctcactgcggcgcaccctggaccagcgccgt
gccctggtcatgcagctcttccaggaccatggcttcttcccatcagcccaggccacggca
gccttccaggcccgctacgcagacattttcccctccaaggtctgtctgcagttgaagatc
cgcgaggtgcgccagaagatcatgcaggcggccactcccacggagcagccccctggagcc
gaggcccccctccccggaccgccccccactggcactgctgctgcccctgtccccactccc
agccctgctgggggccctgaccccacctcacctggctcggactctggcacagctccggct
gccccgccactgcccccacctccagagccgggtcccggacagcctggctgggaggggccc
ccgcagccctcccccccaccccccggcccctccccagctgccacaggcaggtga
DBGET
integrated database retrieval system
