Zalophus californianus (California sea lion): 113936539
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Entry
113936539 CDS
T07874
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113936539 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zca03041
]
113936539 (DHX38)
Enzymes [BR:
zca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113936539 (DHX38)
Spliceosome [BR:
zca03041
]
Complex C
Other components
Step II factors
113936539 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
Flavi_DEAD
AAA_30
Microtub_bd
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
113936539
NCBI-ProteinID:
XP_027475682
UniProt:
A0A6J2F9B3
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Position
17:14264185..14282599
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AA seq
1239 aa
AA seq
DB search
MGGLPSPDIPESVMEDTSEDASIHRLEGTDLDSQVGGLICKTKSAASEQHVFKAPAPRPS
LLGLDLLASLKRREREEKDDGEDKKKSRISSYKDWEESRDDQRDAEEEGSDQAGRHSRKD
RHYRSARVETPSHPGGVSEEFWERSRQRERERREHGVYASSKEEKDRKKERSRDRDCDRK
RDRDERDRSRHSSRSERDGGSERSRRNEPESPRHRPKDAATPSRSTWEEEDSGYGSSRRS
QWESPSPTPSYRDSERSHRQSSRDRDRSLRSRYSDDTPLPTPSYKYNEWADDRRHLGSTP
RLSRGRGRREDGEEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYV
RRREQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKVHLM
VHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHW
ELAGTKLGDIMGVKKEEEPDKALTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQ
RQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRV
AAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSA
IIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRT
FPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELE
NAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKL
KVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQR
TNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVE
FPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDH
LTYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDI
VRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKE
YMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQ
EQEKRSPLGSVRSTKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgggtggtctcccttccccagacatcccagagtctgtcatggaggacaccagcgaggat
gcctccatccatcgattggaaggcactgatctggattctcaggttggcggtcttatttgc
aagaccaaaagtgcagccagtgagcagcacgtcttcaaggcccctgccccccgcccttcc
ttgctggggctggacttgttagcttccctgaagcgaagagagcgagaggagaaggacgat
ggggaggacaagaagaagtccagaatctcctcctacaaggactgggaggagagcagggac
gaccagagggacgccgaggaggagggcagtgaccaagcgggccgacatagccgaaaggac
agacattatcgatctgctcgggtagagactccgtcccatcctggtggtgtgagtgaagag
ttctgggaacgcagtcggcagagagagcgggagcggcgggaacatggtgtctatgcctcg
tccaaagaagaaaaggatcggaagaaagagagatcaagggatcgagactgtgaccgcaag
agagacagagatgagcgggatagaagcagacacagcagcagatccgagcgagatggaggg
tcagagcgcagtagaagaaatgaaccggagagcccgagacaccgacctaaagacgcggcg
accccttcaaggtctacctgggaggaagaggacagtggctatggctcctcaaggcgctcg
cagtgggaatcgccctccccaacgccttcctatcgggattctgagcggagccatcgacag
tccagccgcgatcgggataggtctttgaggagcaggtattcagatgacacacctctgcca
accccgtcctacaaatacaacgagtgggccgatgacagaagacacctggggtccacgccg
cgtctgtccaggggccgaggaagacgcgaggatggcgaagagggaatttcttttgacacg
gaagaggaacggcagcaatgggaggatgaccagaggcaagcggaccgggattggtacatg
atggacgagggatatgatgagttccataatcccctggcctactcctcggaggattacgtg
agaaggcgggagcagcacctgcataaacagaagcagaagcgcatttcggctcagcggagg
cagatcaacgaggataatgagcgctgggagaccaaccgcatgctcaccagtggggtggtc
catcggctggaggtggacgaggacttcgaggaggacagcgcggccaaggtgcacctcatg
gtgcataacctggttcctccctttcttgacgggcgcattgtcttcaccaagcagccagag
cccgtgattccagtcaaggatgccacttcagacctggccattattgctcggaaaggcagt
caaacagtgcggaagcacagggagcagaaggaacgcaaaaaggctcaacacaaacattgg
gagctggctggaaccaagctaggagatatcatgggtgtcaaaaaagaggaagagccagat
aaagctctgacagaagacggtaaagtggactataggacagagcagaagtttgcagatcac
atgaagaaaaagagcgaagccagcagtgaatttgccaaaaagaagtctattctggagcag
cggcagtacctgcccatctttgctgtgcagcaagaactactgactatcattagagataac
agcattgtgatcgtggttggagagacagggagtggtaagaccactcagctgacacagtac
ttgcatgaagatggttacacggactacgggatgatcgggtgcacccagcctcggcgtgtg
gctgccatgtctgtggccaagagagtcagtgaagaaatggggggaaacctcggtgaggag
gtgggttatgccatccgctttgaagactgcacgtcagaaaacaccttgatcaaatacatg
acggacgggatcctgctccgggagtcgctccgggaagcggacctggatcactacagtgcc
atcatcatggacgaggcccatgagcgctccctcaacactgatgtgctctttgggctgctc
cgggaggtggtggctcggcgttcagacctgaagctcattgtcacgtcagccactatggat
gcagagaaatttgctgccttttttgggaatgttcccatcttccacatccctggtcgtacc
ttccctgttgacattctcttcagcaagaccccacaggaggactacgtggaggccgcagtg
aagcagtccttacaggtgcacctgtcaggggcccctggggacatccttatcttcatgcct
ggccaagaggacattgaggtgacctcagaccagattgtggaacatctggaggaactggag
aatgcacctgccttggccgtgctgcccatctactcccagctgccgtctgacctccaggct
aaaatcttccagaaggctccagatggcgttcggaagtgtatcgttgccaccaacattgct
gagacgtctctgactgtggacggcatcatgtttgttattgactctggttattgcaaatta
aaggtcttcaaccccaggattggcatggatgctctgcagatctaccccatcagccaggcc
aatgccaaccagaggtcggggcgtgctggcaggacgggcccaggtcagtgtttcaggctc
tatacccagagcgcctacaagaacgagctcctgaccaccacagtgcctgagatccagagg
accaacctggccaacgtggtgctgctgctcaagtccctcggcgtgcaggacctgctgcag
ttccacttcatggacccgccgcccgaggacaacatgctcaattccatgtatcagctctgg
atcctaggggccctggacaataccggcggtctgacctcgacggggcggctgatggtggag
ttcccgctggacccggcgctgtccaagatgctgatcgtgtcctgcgacatgggctgcagc
tcggagatcctgctcatcgtgtccatgctctccgtgccggccatcttctaccggcccaag
ggccgagaggaggaaagcgatcagatccgggagaagtttgctgtccctgagagtgatcat
ttgacctacctgaatgtctacctgcagtggaaaaataataattactccaccatctggtgt
aacgatcattttatccatgccaaggccatgcggaaggtccgggaggtgcgggctcagctc
aaggacatcatggtacagcagcggatgagcctggcctcgtgtggcactgactgggacatc
gtccggaagtgtatctgtgccgcctatttccaccaggcagccaagctcaagggaattggg
gagtatgtgaatatccggacaggaatgccctgccacctgcaccccaccagctccctcttt
ggaatgggctacaccccagactacatagtgtatcatgagctggtcatgaccaccaaggag
tacatgcagtgtgtgaccgctgtggatggagagtggctggcggagctgggccccatgttc
tacagtgtgaaacaggcaggaaagtctcggcaggagaaccgccgacgggccaaagaggaa
gcctctgccatggaggaggagatggcgctggctgaggagcaactgcgagcccggcggcag
gagcaggaaaagcgcagccccctcggcagtgtcaggtctacaaagatctacactccaggc
cggaaggagcaaggggaacccatgacccctcgccgcacaccagcccgctttgggctctga
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integrated database retrieval system
