Zalophus californianus (California sea lion): 113936899
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Entry
113936899 CDS
T07874
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
113936899 (COL20A1)
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Pur_ac_phosph_N
VWA_2
YjeF_N
Motif
Other DBs
NCBI-GeneID:
113936899
NCBI-ProteinID:
XP_027476194
UniProt:
A0A6J2F4U4
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Position
8:139817924..139845616
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AA seq
1284 aa
AA seq
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MSTPVCPLLGLWLWLWLGVALGLGRGQASSRLRLAVLPEDQLQMKWRESGGGSLGYLVQV
KPRAGDMEQEVMLTTKTPKATVGGLSPSKGYTVQIFELTSSGKALLAQREFVIEDLKSHS
VSRSGQMPLEAAVQPMPSHVGSPDPEPRVALSPSQDPPTPASPQFRCTPPTPVDMIFLVD
GSWSIGHGHFQQVKDFLASVIEPFEIGPNKVQVGLTQYSGDPQTEWDLSTFRTKEEVVTA
VHSLRYRGGNTFTGLALTHVREQNLKPGAGIRPEAAKVVILVTDGKSQDDARAAGRVLKD
LGVAVFAVGVKNADEAELQLLASPPLDITVHNVQDFPQLGTLAGLLSRLICQKVQGGSRG
PVPPAAGTPAPETACTPSSLVVTQVTSSSIQLSWTPAPQLPLKYLITWRPSRGGTPREVV
VEGPTSSAELHSLTAGTEYLVSVFPVGKAGVGQGLRGLVTTAPLPAPQALTLAAVTPRTI
RLAWQPSAGATQYLVRCSPAFPPGQEEGREVRVGQPEALLDGLEPGTDYDVWVQSLQGTE
ASEARGIRARTATLVPPRHLGFSDVSHDSVRVFWEGIPRPVRLFRVSFVSSDGSHSGQVE
APGNASSATLGPLSSSTTYSVRLTCLYPAGGSSTLTGRLTTRKVPSPSQLSVTELPGDEV
QLGWAAAAASGVLVYQIKWTPLGDGKAREISVPGNLGVAVLPGLQSHLEYEITILAYYRD
GTRSDPVSLRYSPARRSPPSNLALASESPSSLRVSWTPPSGHVLRYRLTYMLASGSGPEK
SISVPGPRSHVTLPDLLAATKYRVLVSAVYGAGESMPVSATGQTACPALSPDGPLPGFDL
MAAFGLVEKEYSSIRGVAMERAAFSCARTFTLFKDAQLTRRASGLQLAAPPPEHTVVFLL
RVLPETPRESFALWQMTAEDFQPILGVLLDAGRKSLTYFNHDPRATLQEVTFDLPEVRRI
FFGSFHKVHVAVGRSKVRLYVDCRKVAERPIGEAGSPPAAGFVMLGRLAKARGPRSSSAT
FQLQMLQIVCSESWAEEDMCCELPAAKDGETCPAFPSASTCTCSSQTPGPPGPQGPPGLP
GRNGTPGEQGFPGPRGPPGVKGEKGDHGLPGLQGHPGHQGAPGKVGLQGPKGMRGLEGST
GLPGPPGPRGFQGTAGARGTGGERGPPGAVGPTGLPGPKGERGEKGEPQSLATIYQLLSQ
ASHVLKFHSFLHESARPPRPIWEAPRHPGTLSETRLPGEGGDVGPRPVNGGEPRALSHMG
SPQLKGSEPPGPPGGTGRFPCCPQ
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgagcacccccgtgtgccccctcctcgggctctggctctggctgtggctgggtgttgcc
ctgggactcggccggggacaagcgagcagccgcctgaggctggctgtgctgcccgaggac
cagctgcagatgaagtggagggagtcaggagggggcagcctcggctacctggtacaggtg
aagcccagggcaggggacatggaacaggaggtgatgttgactaccaagacccccaaggcc
acggtggggggcttgagcccctccaagggctacaccgtgcagatcttcgagctcaccagc
tcagggaaggccctgctggcacagcgggagtttgtgattgaggatttgaagagtcactct
gtgagcaggagtggccagatgccactggaggcagccgtgcagcccatgccctcccacgtg
gggagcccagaccctgagccccgagttgccttgtccccaagccaagacccgcccactcct
gctagcccccagttccgctgcacaccccccacacccgtggacatgatcttcctggtggac
gggtcctggagtattggccacggtcatttccagcaggtcaaagatttcctggccagcgtc
atcgagcccttcgaaattgggccaaataaagtccaagtcggcctgactcagtacagtgga
gacccccagaccgagtgggacctcagcaccttccgcaccaaggaggaggtggtgacagct
gtccacagcctccgctacagggggggaaacacgttcacaggcctggccctgactcatgtg
cgggagcagaacctgaagcccggagcggggatccgtccagaggcggccaaggtggtgatc
ctagtgacggacggcaaatcccaggacgatgcccgtgctgctggccgcgtcctcaaggac
ctgggtgttgccgtctttgccgtgggtgtgaagaacgcagatgaggctgagctgcagctc
ctggcgtccccaccgctggacatcaccgtccacaacgtgcaggacttcccgcagctcggc
accttggccggcttgctcagccgcctcatctgccagaaggtgcagggcgggagccggggc
cccgttccaccggccgccggcaccccggccccggagaccgcctgcactcccagcagcctg
gtcgtgacccaggtgacctcttccagcatccagctgtcctggaccccagccccccagctg
ccgctcaagtatctgatcacgtggcggccttccaggggcggcaccccgcgggaggtggtg
gtggaggggcccacctcgtccgcggagcttcacagcctgacggccggcaccgagtacttg
gtgtctgtgttccctgtcggcaaggccggggtcggccagggcctgcggggccttgtgacc
acagcgcctctgcctgcgccccaggccctgaccctggctgccgtgacccccagaaccatc
cgcctggcctggcagccctcggctggggccacacagtacctggtgcgatgctcgccggcc
ttccccccgggccaggaggagggcagagaggtgcgggtgggacagccagaggcactgctg
gacggcctggagcctggcacagactatgatgtctgggtgcagagcttgcaagggacagag
gccagcgaggcccggggcatccgtgccaggaccgccaccctggtgccccccagacacctc
ggcttctcagatgtgagtcacgactcagtccgcgtgttctgggagggcatcccgaggccc
gtgcgcctgttcagggtcagctttgtctccagtgacggcagccactccgggcaggtggag
gcccctgggaacgccagctcggccactctgggccctctctcctcttccaccacgtactct
gtccgcctcacctgcctctaccctgcaggcggttcctccacactgaccggccgcctgacc
acacggaaggtccccagcccgagccagctctcggtgacagagctccctggggacgaggtc
cagctggggtgggcagctgccgcggcttctggagtgctcgtctaccagatcaagtggacc
cccctgggagacgggaaggcccgtgagatctctgtcccagggaacctgggcgtggcggtc
ctgcctggcctccaaagccacttggagtatgagatcaccatcctggcctactacagggac
gggacccgcagcgacccagtgtccctccgctacagccccgcacgccggagcccaccctcc
aacctggccctggcttctgagtcgcccagcagcctgcgggtcagctggacccccccaagc
ggccacgtcctccgctaccggctcacctacatgctggcctcgggctcgggacccgagaag
tcgatctctgtcccaggacccaggagccacgtgacgctccccgacctgctggcagccacc
aaatacagggtcctggtctcggcagtctatggagcaggggagagtatgccagtgtctgcc
acaggccagacggcctgccccgccctcagccccgatggccccctcccaggcttcgacctc
atggcggccttcggcctggtggagaaggagtactcttccatccgtggtgttgccatggag
cgcgcggcgttcagctgtgccaggaccttcacgctcttcaaggatgctcaactgacccgc
cgggccagtggcctccagctggctgcccccccaccagagcacacggtggtcttcctgctg
cgcgtgctgcctgagaccccccgcgagagcttcgcgttatggcagatgacagccgaggac
ttccagcccatcctgggggtcctgctggatgctggcaggaagtctctgacctacttcaac
cacgatcccagggccaccttgcaagaggtcacctttgacctgcccgaagtgaggaggata
ttctttggaagcttccacaaggtgcatgtggccgtgggccgctccaaggtcaggctctac
gtggactgccggaaggtggccgagaggcccatcggggaggcgggcagcccacctgccgcg
ggcttcgtgatgctggggaggttggccaaggcccggggcccccggagcagctcagccaca
ttccagctccagatgctgcagatcgtgtgcagcgagtcctgggcggaggaagacatgtgc
tgcgagctccctgcggcgaaggatggagagacctgccctgccttcccatctgcctccacc
tgcacctgttcctcacagacccctgggcccccggggccccagggacctccgggcctccct
ggaaggaacggaaccccaggagagcagggtttcccagggcccaggggtccgccaggggtc
aaaggagagaaaggggaccatgggctcccgggcttgcagggccatcccggtcaccaggga
gcccctgggaaggtcggcctccagggaccaaagggaatgcgaggcctggaggggagcact
ggcctgcctggacctccaggcccgaggggcttccagggcacggcgggggccaggggcact
ggaggggagagaggacccccgggggccgtggggcccacggggctgccaggacccaaaggg
gagcgaggagagaagggtgagccacagtccctggccaccatctaccagctcctgagccag
gcctctcatgtgctgaagttccactcctttctccatgagagcgccaggccccccaggccc
atctgggaggcccccaggcaccccggcacactcagtgagacccggctccctggagaaggg
ggagatgttggcccccgcccggtgaacggaggtgagcccagagccctcagtcacatgggc
agccctcagctgaaagggagcgagcctccaggacccccaggaggaacaggacggttcccg
tgctgcccacagtga
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