Zalophus californianus (California sea lion): 113937195
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Entry
113937195 CDS
T07874
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113937195 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zca03041
]
113937195 (SNRNP200)
Enzymes [BR:
zca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113937195 (SNRNP200)
Spliceosome [BR:
zca03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113937195 (SNRNP200)
Complex C
U5 SnRNP specific factors
113937195 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
113937195
NCBI-ProteinID:
XP_027476883
UniProt:
A0A6J2FEG7
LinkDB
All DBs
Position
8:35600103..35631823
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVDKDGIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgcccgtagcctgcagtacgagtacaaggcgaactccaatcttgtg
ctccaagctgaccgctctctcattgaccggacccgccgggatgaacccacgggagaggtg
ctgtccctggttgggaagttggagggcacccggatgggagataaggctcaacggaccaaa
ccacagatgcaggaggaaagaagagctaagcgacgaaagcgtgatgaggaccgacacgac
attaacaagatgaagggttataccctgctgtccgagggcatcgatgagatggtgggcatc
atctataagcccaagactaaagagacccgggagacctatgaggtgctgctcagcttcatc
caggctgcccttggggaccagccacgtgatatcctttgtggggcagctgatgaagttctc
gctgtcctaaagaatgaaaagcttcgggacaaggaaagaagaaaggagattgacctgctg
ttgggtcagacagatgataccagataccatgtgctagtgaacttgggcaaaaagatcaca
gactatggtggagacaaggaaatccagaatatggatgacaacattgatgagacatacggt
gtgaatgttcagtttgagtctgatgaggaggaaggtgatgaagatgtgtatggggaggtt
cgagaagaggcatctgatgatgacatggaaggggacgaggctgtagtgcgttgcaccctc
tcggctaatcttgtagcctcaggggaactgatgagttccaagaagaaggatttacaccct
cgggatattgatgcattttggctacagaggcagctcagtcgcttctatgatgatgccatt
gtgtcacagaagaaggcggatgaagtgttggagatcttgaagacagccagtgatgatcgg
gaatgtgagaaccagctggtcctgctccttggtttcaacacgttcgattttattaaagtg
ttgcgacagcacaggatgatgattttatactgtaccttactggccagtgcacagagtgaa
gcggaaaaggaaaggatcatgggaaagatggaagctgatccagaactctccaagttcctc
taccagctccacgagactgaaaaggaagatctgatccgggaggaaaggtcccggagagag
cgagtgcgtcagtcccggatggacacggacttggaaaccatggatctggaccagggtgga
gaggcactggctccacggcaggttctggacttggaggacctggtttttacccaggggagc
cactttatggccaataaacgttgtcagcttcctgatgggtccttccgtcgccagcgcaag
ggctatgaagaggtgcatgtgcctgctctgaagcccaagcccttcggttcagaggaacaa
ctgcttccagtggagaagctgccgaagtatgcccaggctggatttgagggcttcaaaacc
ctgaaccggatccagagtaaactgtaccgtgctgctctggagacagatgagaatctgctg
ctgtgtgcccctacaggtgcgggaaagaccaacgtggccctgatgtgtatgctccgagag
atcgggaaacacattaacatggatggcactatcaacgtggatgacttcaagattatctac
atcgctcccatgagatctctggtacaggagatggtgggcagttttggaaagcgcctggcc
acctatggcatcactgttgcagaactgactggtgaccaccagctgtgcaaggaggagatc
agtgccactcagatcatcgtctgcacccccgagaagtgggacatcattacccgtaagggt
ggggagcgcacctacacccagctcgtccggctcatcattctggatgagatccaccttctc
cacgatgacagaggtcctgtcttagaagctttggtggccagggccatccgaaacattgag
atgacccaggaggatgtccgactcattggtcttagtgccaccctccccaactatgaagat
gtggctaccttcctgcgtgtcgatcctgccaaaggcctcttctacttcgacaacagcttc
cgcccagtgcctctggaacagacttatgtgggtatcacggagaaaaaagctatcaagcgt
ttccagatcatgaatgaaatagtctatgagaaaatcatggaacatgctggaaaaaatcag
gtgctggtgttcgtccactcccggaaggagactgggaagacggccagggccatccgggac
atgtgcctagagaaggacactctgggtctgtttctgagagagggctcagcctccacagaa
gtccttcggacagaagctgagcagtgtaagaacctggagctgaaggatcttctgccgtat
ggctttgctattcatcatgcaggcatgaccagagttgaccggacacttgtagaggatctt
tttgctgataaacacattcaggtcttagtttccacagcaacgctggcttggggtgtgaat
ctccccgcacatacagtcatcatcaaaggaacccaggtgtacagtccagagaaggggcgc
tggacagaactaggggcactggacattctgcagatgctcggacgtgctggaagaccccag
tatgacaccaagggcgaaggcatactcatcacatctcacggggagctgcagtactacctg
tccctcctcaatcaacaacttcctattgagagccagatggtttcgaagttgcctgacatg
cttaatgctgaaatcgtgctggggaatgtgcagaatgccaaggatgcggtgaactggctc
ggctatgcctatttgtatatccgaatgctccgatcgccaaccctctatggcatctctcac
gatgacctcaagggggatcccctgctggaccagcgccgactggatctggttcatactgct
gccttgatgctggataagaacaatctggtcaagtatgacaagaagacaggcaatttccag
gtgaccgagttgggccgcatagccagccactactacatcaccaatgatacagtacagacc
tacaaccagctgctgaagcccaccctgagtgagattgaacttttcagagtcttctccttg
tcctcagagttcaagaacatcactgtgagggaggaggagaagctggagctgcagaagctg
ctagagcgggtgcccatccccgtgaaggagagcattgaggagcccagcgcgaagatcaat
gtgctgctccaagccttcatctcgcagctgaagttggagggctttgcgctgatggcggac
atggtgtacgtcactcagtcggctggccggttgatgcgtgccatctttgaaattgtcttg
aaccgaggttgggcgcagcttacagacaagacactgaacctctgcaagatgattgacaag
cgcatgtggcagtccatgtgtcctctgcgccagttccggaagctccccgaggaagtagtg
aagaagattgagaagaagaacttcccctttgagcgcctgtatgacctgaatcataatgag
ataggggagcttatccgcatgccgaagatggggaagaccatccacaagtacgtccacctc
ttccccaagttggagttgtcggtgcacctccagcctatcacgcgctccaccctgaaagtg
gagctgaccatcacgccggacttccagtgggatgaaaaggttcacgggtcatcagaggca
ttctggattctggtggaggatgtggacagtgaggtgatactccaccatgagtattttctc
ctcaaggccaagtatgcccaggacgagcacctcattacgttcttcgtgcctgtcttcgaa
ccactgccccctcagtacttcatccgagtggtatctgatcgctggctctcttgtgagacc
cagctgcctgtctccttccggcacctgatcctaccagagaagtacccacctccaactgag
cttctggacctgcagcccttgcccgtgtctgccctgagaaacagtgcttttgagagcctt
taccaggataagtttcctttcttcaaccccatccagacccaagtgttcaacaccgtctac
aacagtgacgacaatgtgtttgtgggggccccgacgggcagtgggaagaccatctgtgcg
gagtttgccatcctgcggatgctgctgcagaactcagaggggcgctgtgtctacatcacc
cccatggaggctctggcggagcaggtgtacatggactggtatgagaagttccaggacagg
ctcaacaagaaggtggtgctcctgacgggggagactagcacagacctgaaacttctaggc
aagggcaatatcatcatcagcacccctgagaagtgggacatcctttctcggcggtggaag
cagcgcaagaatgtccagaacatcaacctcttcgtggtggatgaagttcaccttattggg
ggcgagaatgggcctgtcttagaagtgatctgctcccggatgcgctacatctcctcccag
attgagcgacccattcgcattgtggcacttagctcctcgctctcaaacgctaaggacgtg
gcccactggctggggtgcagtgcgacctctactttcaacttccacccaaacgtgcgcccc
gtgcccttggagctgcacatccagggcttcaacatcagccacacacaaacccgcctgctc
tccatggccaagcccgtgtaccacgctatcaccaaacactctcccaagaagccggtcatt
gtttttgttccgtcccgaaagcagacccgcctcactgccatcgacattctcaccacatgt
gcggcggacatccagcggcagaggttcttgcactgcaccgagaaggatctgatcccgtac
ttggagaagctaagtgacagcacgctcaaggaaacactgttaaatggggtaggctacctg
cacgagggcctcagtcccatggagcgacgcctggtggaacagctcttcagctcaggggcc
atccaggtggtggtagcttctcggagtctctgctggggcatgaatgtggctgctcacctg
gtgatcatcatggacacccagtactacaatggcaagattcatgcgtatgtggattacccc
atctacgatgtgcttcagatggtggggcatgccaaccgccctttgcaggatgatgagggc
cgctgtgttatcatgtgccagggctccaaaaaggatttcttcaaaaagttcttatatgag
ccattgccagtagagtcccatctggaccactgtatgcacgaccacttcaatgctgagatt
gtcaccaagaccatagagaacaagcaggacgctgtggactacctgacctggacctttctg
taccgccgcatgacccagaaccccaattactacaatctacagggcatctcccatcgtcac
ctgtctgaccacttgtctgagctcgtggagcagaccctgagtgacttggagcagtccaag
tgcattagcattgaggacgagatggatgtggcacccctgaacctgggcatgatcgctgct
tactattacatcaactacaccaccattgagctcttcagcatgtccctgaatgccaagacc
aaggtgcgagggcttattgagatcatctccaatgcggcggagtatgagaacattcccatc
cggcaccatgaagataacctcctgcggcagttggctcagaaggtcccccacaagctgaat
aacccgaagttcaatgacccgcacgtcaagaccaacctgcttctgcaggctcacctgtcc
cgcatgcagctgagcgctgagctgcagtcggatacggaggaaatcctcagcaaggcaatc
cggctcatccaggcctgtgtggatgtcctttccagcaacgggtggcttagccctgccctg
gcagcgatggagctggcccagatggtcacccaagccatgtggtccaaggactcctacctg
aaacagttgccacacttcacctcagagcatattaaacggtgcacagataagggagtggag
agcgtttttgacatcatggagatggaagatgaagaacgaaatgcgctgcttcagctgtct
gacagccagattgcagacgtggcccgcttctgcaaccgctacccgaacatcgagctttct
tacgaggtggtggataaggacggcatccgcagtggcgggccggtggtggtgctggtgcag
ctggagcgtgaggaggaagtcacaggccccgtgatcgcgcctctctttccgcagaaacgt
gaagagggctggtgggtggtgatcggcgatgccaagtccaatagcctcatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaagcttgactttgtggccccagccactggt
gcccacaattacaccctgtatttcatgagtgatgcttacatgggatgtgaccaggaatac
aaattcagtgtggacgtgaaggaagcagagacagacagtgactcagactga
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integrated database retrieval system
