Zalophus californianus (California sea lion): 113937572
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Entry
113937572 CDS
T07874
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
zca
Zalophus californianus (California sea lion)
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zca03041
]
113937572 (DDX1)
03016 Transfer RNA biogenesis [BR:
zca03016
]
113937572 (DDX1)
Enzymes [BR:
zca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113937572 (DDX1)
Spliceosome [BR:
zca03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113937572 (DDX1)
Transfer RNA biogenesis [BR:
zca03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113937572 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Paramyxo_PNT
Motif
Other DBs
NCBI-GeneID:
113937572
NCBI-ProteinID:
XP_027477844
UniProt:
A0A6J2F9P3
LinkDB
All DBs
Position
8:12248858..12290213
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGLTKGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKASDSYVVKSQHTGNAQVAQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKRLQVIICSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttttctgagatgggtgttatgcctgagattgctcaagctgtagaagagatg
gattggcttctcccaactgatatccaggctgaatctatcccactgatcctaggaggcggt
gatgtacttatggctgcggaaacaggaagtggaaaaactggtgctttcagtattccagtt
atccagatagtttatgaaactctgaaagaccaacaggaaggcaaaaaaggaaaaacaaca
attaaaactggtgcttcagtgctcaacaaatggcaaatgaacccatatgatagaggatct
gcttttgcaattgggtctgatggtctttgttgtcaaagcagagaagtgaaggagtggcat
ggatgcagagctactaaaggattaacgaaagggaagcactactatgaagtgtcctgtcat
gaccaaggattatgcagagttgggtggtcgtccatgcaggcttccttagacctaggtact
gacaagttcggatttggctttggtggaacaggaaagaaatcccataataaacaatttgat
aattatggagaggaattcactatgcatgataccattggatgttacctcgatatagataaa
gggcatgtcaaattctccaaaaatggaaaagaccttggtctggcatttgaaataccacca
catatgaagaaccaagccctctttcctgcttgtgttttgaagaatgccgaactaaaattt
aacttcggtgaagaagaatttaagtttccaccaaaagatggttttgttgctctttccaag
gcatcggatagttatgttgttaaatcacagcacacaggtaatgcacaagtggcacaaacg
aagtttctgcccaatgctccgaaagctctcatcgtcgagccctcccgagagttagctgaa
caaactttgaataacgtcaagcagtttaagaaatatattgataatcctaagttaagggag
cttctgataattggaggtgttgcagcgcgggatcagctctctgttttggataatggggta
gatatagtcgttggcactccaggaagactagatgatttggtgtcaactggaaaactgaac
ttatcccaagttagattcctggtcctggatgaagctgatgggcttctttctcaaggttac
tctgatttcataaataggattcacaatcagattcctcagattacctctgatgggaaaaga
cttcaggtgattatttgctctgctactttgcattcttttgatgtgaagaagctgtctgag
aagataatgcattttcccacgtgggttgatttaaaaggagaagactccgttccggacact
gtacaccatgttgttgtcccagtgaatcccaaaactgacagactctgggaaaggcttggg
aaaaaccacattagaactgatgatgtacatgcaaaagataacacaagacctggtgctaat
agtcccgagatgtggtctgaagctattaaaatcctgaagggggagtatgctgtccgggca
atcaaggaacacaagatggatcaagcaattattttctgtagaaccaaaattgactgtgat
aacttggagcaatattttatgcaacaaggaggaggacctgataaaaaaggacaccagttc
tcatgtgtttgtcttcatggggacagaaagcctcatgaaaggaagcaaaacttggaaaga
tttaagaaaggagatgtaagattcttgatttgcacagatgtagccgccagaggaattgat
atccatggtgttccttatgttataaacgtcaccttgcctgatgaaaagcaaaactatgta
catcgaattggcagagtaggaagagctgaaaggatgggtctggccatttccctggtggca
acagagaaagaaaaggtttggtaccatgtatgtagcagccgtggaaaaggatgttataac
acaagactcaaggaagatggtggctgtaccatatggtacaatgagatgcagttgctgtct
gagatagaagagcatctgaattgcaccatttctcaggttgaaccagatataaaggtacca
gtggatgaatttgatggcaaagtcacctatggtcagaaaagggccgctggtggtggaaac
tataaaggccatgtggatattttggcacctacagttcaagagttggctgcccttgaaaag
gaggcgcagacatctttcctgcatcttggctaccttcctaaccagctgttcagaaccttc
tga
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