Zalophus californianus (California sea lion): 113938230
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Entry
113938230 CDS
T07874
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca01524
Platinum drug resistance
zca03430
Mismatch repair
zca05200
Pathways in cancer
zca05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113938230 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
113938230 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
113938230 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
113938230 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zca03400
]
113938230 (MSH6)
DNA repair and recombination proteins [BR:
zca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113938230 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
HORMA
MUM1-like_PWWP
WPP
Motif
Other DBs
NCBI-GeneID:
113938230
NCBI-ProteinID:
XP_027479335
UniProt:
A0A6J2FH69
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Position
8:complement(72627259..72649744)
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AA seq
1364 aa
AA seq
DB search
MSRQSTLYSFFPKSPALNNANKTSVRASGVGGEAAAATRASRSPGGDAAWSEAEPGPGPL
AGSASPREARNINGGLRRSAAPAVPASSSDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTF
IREKGKSVRVHVQFFDDSPTRGWVSRRLLKPYTGSKSKEVQKGGHFYSSKPEILRAMQRA
DEALSKDKIERLELAVCDEPSEPEEEEEMEVGATYSSGKSEEDNEIESEEEVRPKVQGSR
RSSRQIKKRRVISDSESDIGGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVASK
RKKMVTGNGSLKRKSSRKEMPLATKRSSGISSETKSALNAFSAPQNSESQAHIGGGCDDS
SRPTIWYHETLEWLKEEKRRDLHRRRPDHPDFDVSTLYVPEDFLNSCTPGMRKWWQIKSQ
NFDLVIFYKVGKFYELYHMDALIGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYK
VARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYL
LSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKG
NLSTETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFKEKLNEDSGVMLPQVL
KGMTSESDSLGLTPGERSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVGA
TKPDAVFAKANQRMVLDAVTLSNLEIFTNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLC
APLCSPYAINDRLDAIEDLMVVPDKISDVADLLKKLPDLERLLSKIHNVGSPLKSQNHPD
SRAIMYEETTYSKKKIIDFLSALEGFKVICKIIEIMEEVVDNFKSKILKQVITLQTKNPE
GRFPDLTIELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQR
SRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLI
NAEERRDVSLKDCMRRLFFNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVI
LLPEEGTPPFLDLRGSRHPCITKTFFGDDFIPNDILIGCEEEEEEEENGKAYCVLVTGPN
MGGKSTLMRQAGLLAVMAQTGCYIPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE
TASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDY
SQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKG
HRKAREFEKMTQSLRLFREVCLASERSTIDAEAVPKLLTLIKEL
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctgtacagcttcttccccaagtctccagcgctgaataatgct
aataagacctcggtcagggcttcaggtgtaggcggcgaggccgccgctgccaccagggcc
tcccgttctcccggcggggatgcggcctggagcgaggccgaacctgggcctgggcccttg
gcaggctccgcgtcgccgcgggaggcgaggaacatcaatggagggctgcggagatctgcc
gctcctgcggtccccgccagttcttctgacttctcaccaggtgatttggtttgggccaag
atggagggttacccctggtggccttgcctggtttacaaccacccttttgatggaacattc
atccgtgagaaagggaagtctgtccgagttcatgtacagttttttgatgacagcccaaca
aggggctgggttagcagaaggctattaaagccatatacaggttcaaaatcgaaggaagtg
caaaaaggaggtcatttttacagttcaaagcctgaaatactcagagcaatgcaacgtgca
gatgaagccttgagtaaagacaagattgagaggcttgaattggcagtgtgtgatgagccc
tcagaaccagaggaagaagaagagatggaggtaggtgcaacttactcatcaggtaagagt
gaagaagataatgaaattgaaagtgaagaggaagtacggcctaaggtccaaggatctagg
cgaagtagccgccaaataaaaaaacgaagggtcatatcagactctgagagtgacattggc
ggctctgatgtggaattcaagccagatgctaaggaggaagggagtagtgatgaaataagc
agtggagtgggggatagtgacagtgaaggcctggacagtcctgtcaaagttgcttcaaag
cggaagaaaatggtgactggaaatggttctctcaaaaggaaaagttcaaggaaggaaatg
cccttggctaccaaacgatcaagtggtatttcatcagaaaccaagagtgctttgaatgct
ttctctgcccctcaaaattctgaatctcaagcccacattggtggaggatgtgatgatagt
agtcgccccactatctggtatcatgaaactttagagtggcttaaggaggaaaagagaaga
gatctacacaggaggcgacctgatcaccctgattttgatgtatccacactctatgttcct
gaggatttccttaattcctgtactcctgggatgaggaagtggtggcagattaagtctcag
aactttgatcttgttatattttataaggtggggaagttttatgagctgtaccacatggat
gctcttattggagtcaacgaactaggtctggtattcatgaaaggcaactgggctcattct
ggtttccctgaaatagcatttggccgatactccgattctctggttcagaagggctataaa
gtagcacgagtggaacagactgagacccctgaaatgatggaggcacggtgccggaagatg
gcacatatatctaaatatgacagagtggtgcggagggagatctgtagagtcattaccaag
ggtacacagacctacagtgtattggaaggtgacccctctgagaactatagtaagtatctt
cttagcctcaaagaaaaagaggaagattcttctggccacactcgggcgtatggagtatgc
tttgttgatacctcactgggaaagtttttcataggtcagttttcagatgatcgccattgt
tccagatttaggactctagtggcacactatcctccagtacaagtcttgtttgagaaagga
aatctctcaacagaaactaagatgattctgaagggttcattatcatcctctcttcaggaa
ggtctgataccaggctcccagttttgggatgcagctaaaactttgagaactctccttgaa
gaaggatattttaaggagaagttaaatgaggacagtggggtgatgttaccccaggtgctt
aaaggtatgacctcagagtctgattctcttgggttgacaccaggagagagaagtgaattg
gccctctccgctctaggtggttgtgtcttctacctcaaaaaatgccttattgatcaagag
cttttatcaatggctaattttgaagaatacattcccttggattctgacatggtcggtgct
acaaaacctgatgctgtttttgctaaagccaatcaacgaatggtgctagatgctgtgaca
ttaagcaacttggagattttcacgaatggaacaaatggttctactgaagggaccctgcta
gaaaagattgatacttgccatactccctttggtaagcggcttctaaagcagtggctttgt
gccccactctgtagcccttacgctatcaacgatcgtctagatgctatagaagacctcatg
gttgtgcctgacaaaatctctgacgtggcagaccttctgaagaagcttccagaccttgaa
aggctgctgagtaaaattcacaatgttgggtctcccctgaagagccagaaccacccagat
agcagggctatcatgtatgaagaaactacgtacagcaaaaaaaagattattgattttctt
tctgctctagaaggattcaaagtaatatgtaaaattatagagattatggaagaagtcgtt
gacaactttaagtctaaaatccttaagcaggtcattactctacagacaaaaaatccggag
ggccgttttccagatttgactatagaactgaaccgatgggatacagcctttgaccatgag
aaggctcgaaagactggactaattactcccaaagcaggatttgactctgattatgaccaa
gctcttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaacagcgc
agtcgaattggctgtaggaccattgtctactggggaatcggtaggaaccgttaccagttg
gaaattccagagaatttcatcactcgtaatttgccagaagaatatgagctaaaatctacc
aagaaggggtgtaagcgatactggaccaaaactattgagaagaagttggctaatctgata
aatgctgaagaacggagagacgtatcattgaaggactgcatgcggcgactgttctttaac
tttgataaaaattacaaggactggcagtctgctgttgagtgcatcgcagtattggatgtc
ttattgtgcctggctaactacagtcgagggggtgatggccctatgtgtcgtccagtaatt
ctgttgccagaagaaggcactcctcccttcttagaccttagaggatcacgtcatccctgc
attacgaagactttttttggagatgactttatacctaatgacattctaataggctgtgag
gaagaagaggaggaggaggaaaatggcaaagcttattgtgtgcttgtgactggacctaac
atggggggcaagtccacgctcatgagacaggctggcctattagctgtaatggcccaaacg
ggttgttacatacctgctgaagtgtgtagactcacaccaattgatagagtatttactaga
cttggtgcctccgacagaataatgtcaggtgaaagtacattttttgttgaattgagtgaa
actgccagtatacttacacatgcaacagcacattctctggtgcttgtggatgaattagga
agaggtactgcaacatttgatggaacagcaatagcaaacgcggttgttaaagaacttgct
gagaacataaagtgtcgtacattgttttctacccactaccattcattagtagaagattat
tcccaaaatgttgcagtgcgcctgggccacatggcatgcatggtagaaaatgaatgtgag
gatcccagccaggagactattaccttcctctataaattcattaagggagcttgtcctaaa
agctatggctttaatgcagcaaggcttgctaatcttccagaggaggttattcaaaaggga
catagaaaagcaagagaatttgagaagatgactcaatcactgcgattatttcgggaagtt
tgcctggctagtgaaaggtcgactatcgatgctgaagctgtccctaaattgctgactttg
attaaggaattatag
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integrated database retrieval system
