Zobellella denitrificans: AN401_00240
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Entry
AN401_00240 CDS
T05100
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
zdf
Zobellella denitrificans
Brite
KEGG Orthology (KO) [BR:
zdf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zdf03016
]
AN401_00240
Enzymes [BR:
zdf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AN401_00240
Transfer RNA biogenesis [BR:
zdf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AN401_00240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
ATG72461
UniProt:
A0A231MUP4
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All DBs
Position
complement(53725..55710)
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AA seq
661 aa
AA seq
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MLQDNPLLAQLKQQLRESMPTKEGTVKATAKGFGFLEVSEKESIFIPPPYMKKVLHGDRI
TALVRTENEKEVAEPETLVEQGLTRFVARVKWFRDRLNIVPDHPLIKDAIKARTIKGLDE
KGLKEGDWVLGELKRHALKDNGFFAEVVELIAGVDDPIAPWWVVLARNKLANQAPRDQDE
WQTLEESLPRRDLTEVPFFTIDSESTQDMDDALSVKKLDNGWELTVAIADPTAYVPHDSD
LDKVAAERAFTVYLPGRNIPMLPRTLADELCSLKAGEERPALCARLLIDFDGKVTDQVEF
FAARIRSQAKLAYDKVSDWVEQKGDWQPESEVIAEQLRELTELTRARSAWRSEHAIVFKD
RPDYRFELDDASNVVAIHVDHRRIANQMVEEAMIAANLACGNWLAEHAGTGVFNVHAGFD
AEKLAQVAELLQAHEAPFEPESLASLEGFCALRRWLDARDTSYLDNRVRRYQSFAAMSVT
PAEHYGLGLAAYATWTSPIRKYGDIINHRLIKAILAEQEHEAHAPSAELAQHLSEQRRMH
RRAERDIADWLYVRYLQPAVAEGKVFDAEIIDIGRGGVKLRLQENGAVVFMPSSLILANR
DRLECSWDDGRVYLDKEAVYELGQHIQVILTEAIEDTRSLIAKPAIPLVPEKQEKPEQPA
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaagacaaccccctgctggcccagctcaagcaacagctgcgcgaatccatgccg
accaaggaaggcaccgtcaaggccaccgccaaaggtttcggcttcctcgaggtgagcgag
aaggaaagcattttcatcccgccgccctacatgaagaaggtgctgcacggcgaccgcatc
accgccctggtgcgcaccgaaaacgagaaggaagtggccgagccggaaaccctggtcgag
caggggctgacccgcttcgtggcccgggtgaagtggttccgcgaccggctcaacatagtg
cccgatcacccgctgatcaaggacgccatcaaggcccgcaccatcaaggggttggatgaa
aagggcctgaaggaaggcgactgggtgctgggcgagctcaagcgccacgccctcaaggac
aacggctttttcgccgaggtggtggagctgatcgccggggtcgacgaccccatcgccccc
tggtgggtggtgctggcccgcaacaagctggccaaccaggcgccccgggaccaggacgag
tggcagaccctggaagaatccctgccgcgccgggatctcaccgaggtgcccttcttcacc
atcgacagcgagtccacccaggacatggacgacgccctcagcgtgaagaagctggacaac
ggctgggagctgaccgtggccatcgccgatcccaccgcctatgtgccccacgacagcgat
ctggacaaggtcgccgccgaacgcgcctttaccgtctacctgcccggccgcaacattccc
atgctgccgcgcaccctggccgacgaactgtgctcgctcaaggccggcgaagagcgcccc
gccctgtgcgcccgcctgctgatcgactttgacggcaaggtcaccgaccaggtggaattc
ttcgccgcccgcatccgctcccaggccaagctggcctacgacaaggtctccgactgggtc
gagcagaaaggcgactggcagccggaaagcgaagtgatcgccgagcagctgcgcgagctg
accgaactcacccgcgcccgcagcgcctggcgcagcgagcacgccatcgtgttcaaggac
aggcccgactaccgcttcgagctggacgacgccagcaacgtggtggccattcacgtggat
caccgccgcatcgccaaccagatggtggaagaggcgatgatcgccgccaacctggcctgc
ggcaactggctggccgaacacgccggcaccggggtgttcaacgtacacgccggcttcgac
gccgagaagctggcccaggtggccgaactgctgcaggcccacgaagcccccttcgagccg
gaaagcctggccagcctggaaggcttctgcgccctgcgccgctggctggacgcccgcgac
accagctacctggacaaccgggtgcgccgctaccagtctttcgccgccatgagcgtgacc
ccggccgagcactacggcctgggcctggccgcctacgccacctggacctcgcccatccgt
aaatacggcgacatcatcaaccaccggctgatcaaggcgatactggccgagcaggagcac
gaggcccacgcgcccagcgccgagctggcccagcacctgtccgagcagcgccgcatgcac
cgccgcgccgagcgcgacatcgccgactggctctatgtgcgctacctgcagccggcggtg
gccgagggcaaggtattcgacgccgaaatcatcgacatcggccggggcggcgtaaagctg
cgcctgcaggaaaacggtgccgtggtatttatgccctcctccctgatcctggccaaccgg
gaccggctggaatgcagctgggacgacggccgcgtctacctggacaaggaagccgtctac
gaactgggccagcatatccaggtaatcctcaccgaggccattgaagacacccggtcgctt
atcgccaagccggccattccgctggtaccggagaagcaggaaaaaccggaacaacccgct
tcctga
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