Zobellella denitrificans: AN401_08230
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Entry
AN401_08230 CDS
T05100
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
zdf
Zobellella denitrificans
Brite
KEGG Orthology (KO) [BR:
zdf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zdf03019
]
AN401_08230
Enzymes [BR:
zdf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AN401_08230
Messenger RNA biogenesis [BR:
zdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AN401_08230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
ResIII
SLFN-g3_helicase
Cas3-like_C_2
ABC_tran
T2SSE
AAA_24
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ATG75853
UniProt:
A0A291HUJ5
LinkDB
All DBs
Position
1749864..1753739
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AA seq
1291 aa
AA seq
DB search
MAQSVEQLQARLKECRGAQRGRLRRRLQGLEKLPEAKRQKILEGIALEMATSMAERARRQ
QLLQSPIQYPPQLPVSDKRDTIKAAIRDHQVVIIAGETGSGKTTQIPKMCLELGLGIEGT
IGHTQPRRLAARSVASRLAQELGCELGERVGYKVRFNDQVSNETQVKLMTDGILLAEIQQ
DRMLRQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKLIITSATIDPERFSNHFEGA
PIISVSGRTYPVELRYRPLVEDDSERDQLQGIFDAVTELTREGPGDILIFMNGEREIRDT
ADALNKLELRHTEIVPLYSRLSNAEQNRIFESHTGRRIVLATNVAETSLTVPGIRYVIDP
GTARISRYSHRTKVQRLPIEPVSQASANQRMGRCGRVEAGICIRLYGEDDFLNRPEFTDP
EILRTNLASVILQMLSLGLGDISAFPFVEAPDKKHISDGIRLLEELGAVTGEQGDLKLTP
LGQDLARLPVDPRLGRMVLAARDYGCVTEVMVITAALSIQDPRERPLDKQQAAAEMHRRF
ADSDSDFVAYLNLWNYLKEQQKLLSGNQFRKQCIKEFLNYLRVREWQDIYSQLRLVVREL
GFALNSEPADYNSLHRALLTGMLSQVGMRDGDKKEILGARNARFVLVPGSALAKKPPRWL
MVAELTETQRLYGRIAARIDQQWLEEAGAHLLKSSYSEPYWSKKQGAVMGYVSQSLFGLP
VVVRRRVNYSHVDPKLCRELFIRQALVEGELATRHEFFHHNRALLEQAETLEHKSRRRDL
VIDDETLFRFYDERLPADIVSIRHFDKWWQQARKDNPELLHFTEEMLLNERAGAVTTRDY
PDAWQHDGLNLALEYQFEPGKDEDGVTVRIPLPLLNQVAAEPFEWQVPGLRRELLIALIK
SLPKPMRKHFVPAPNFAEALLAAMTPFEGRLLDQMEKHLRRMTGVTVPREDWDWSALPPH
LIMRFAVLDADGKELAAGRDLERIKLALQGQVQTALTQAVDDDRFEQEGLTAFPARAIPQ
TFAAKRAGFEVKAYPALSDQGDSVALQLCEDEPSQARTMWDGQCKLLQLQLPSPIKYLQD
KLPNKAKLGLYFNPYGKVLDLVDDCIRAGIHALMRQYGAPAWTPEEFAALKDKVAGELNP
TVAAIALQVEEVLSRAQAIKKRLKGKIDLAMAMAMSDIQAQLDGLIFRGFVTDTGAERLK
DLSRYLEALSRRLDKLAIDPHRDRAHLLKIQQVQTAYQALLNKQPRGKPLAPEVKEVRWM
IEELRVSYFAQTLGTPYPVSDKRVLQQIEGL
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttggcgcagtcggttgaacagttgcaggcaaggctgaaagagtgccggggcgcacagcgg
gggcgcttgcgccgccgcctgcaggggctggaaaagctgcccgaggccaaacgacagaaa
atactggagggcatcgccctggagatggctacctccatggccgagcgggcccgcaggcaa
cagttgctgcaaagccccatccagtatccgccgcaactgccggtaagcgacaagcgcgac
accatcaaggccgccattcgcgaccaccaggtggtgatcatcgccggcgaaaccggctcg
ggcaagaccacccagatccccaagatgtgcctggagctcggccttggcatcgagggcacc
ataggccacacccagccccggcggctggcggcccgcagcgtggcgagccggctggcgcag
gagctgggctgcgagctgggcgagcgggtcggctacaaggtgcgcttcaacgaccaggtg
agcaatgagacccaggtaaagctgatgaccgacggcatcctgctggccgagatccagcag
gaccggatgctgcgccagtacgacaccatcatcatcgacgaggcccacgagcgcagcctc
aacatcgactttatcctgggctacctgaagcagctgctgcccaaaagacccgatctcaag
ctgatcatcacctcggccaccatcgatccggagcgcttttccaaccacttcgagggcgcg
cccatcatttcggtgtccggccgtacctacccggtggagctgcgctaccgcccgctggtg
gaggacgacagcgagcgagaccagctgcagggtattttcgatgcggtgaccgagctgacc
cgcgaaggcccgggcgacatcctcatctttatgaacggcgagcgggagatccgcgacacc
gccgacgccctgaacaagctcgagctgcgccacaccgaaatagtgccgctctactcacgc
ctgtccaacgccgagcagaaccgcattttcgaatcccacacgggccggcgcatcgtgctg
gccaccaacgtggcggaaacctcgctcaccgtgcccggcatccgctacgtgatcgatccg
ggcacggcgcgcatcagccgctattcccaccgcaccaaggtgcagcgcctgcccatcgag
cccgtgtcccaggccagcgccaaccagcgcatgggccgctgcggccgggtggaggcgggc
atctgcatccgcctctacggcgaggacgactttttaaaccggccggagtttaccgacccg
gagatcctgcgcaccaacctggcctcggttattttgcagatgctctccctggggctgggc
gacatttccgccttcccctttgtggaggcgccggacaagaagcacatctccgacggcatc
cggctgctggaagagctgggcgcggtcaccggcgagcagggcgacctcaagctcacccca
ctgggccaggatctggcccggctgccggtggacccgcgcctgggccgcatggtgctggcg
gcccgcgactacggctgcgtgaccgaggtgatggtgatcaccgccgcgctcagcatccag
gacccgcgcgagcgcccgctcgacaagcagcaggccgccgccgaaatgcaccgccgcttc
gccgacagcgattccgactttgtcgcctacctgaacctgtggaactacctcaaggagcag
cagaaactgctgagcggcaaccagttccgcaaacagtgcatcaaggaattcttgaactac
ctgcgggtgcgcgagtggcaggacatctacagccagctgcggctggtggtgcgcgagctg
ggctttgcgctgaacagcgagcccgccgattacaacagcctgcaccgggcgctgctcacc
ggcatgctgagccaggtgggcatgcgcgacggcgacaagaaggagatcctgggcgcgcgc
aacgcccgctttgtgctggtgcccggctcggccctggccaagaagccgccgcgctggctg
atggtggccgaactgaccgaaacccagcgcctctacggccgcatcgccgcccgcatcgat
cagcagtggctggaggaggcgggggcgcatttgctcaagtccagctacagcgagccctac
tggtccaagaaacagggcgcggtgatgggctatgtgagccagagcctgttcggcctgccg
gtggtggtgcgccggcgggtgaactattcccatgtggaccccaaactgtgccgcgagctc
tttatccgccaggcgctggtggagggggaactggccacccgccatgagttcttccaccac
aaccgggccctgctggagcaggccgagaccctggagcacaagtcccgccgccgggatctg
gtgatcgacgacgagaccctgttccgtttttacgacgagcggctgccggcggacatcgtc
tccatccgccacttcgacaagtggtggcagcaggcgcgcaaggacaaccccgagctgctg
cactttaccgaagagatgctgctgaacgagcgggcaggggcggtcaccacccgcgattac
ccggacgcctggcagcacgacggcctgaacctggccctggagtaccagttcgagccgggc
aaggacgaagacggggtgacggtgcgcattccgctgccgctgctcaaccaggtggcggcc
gagcccttcgagtggcaggtgccgggcctgcgccgggagctgctgatcgcgctgatcaag
tccctgcccaagccgatgcgcaagcactttgtgccggcgcccaacttcgccgaggcattg
ctggcggccatgactcccttcgagggccggctgctcgaccagatggaaaaacacctgcgc
cgcatgaccggggtgacggtgccgcgcgaggactgggactggagcgcgctgccgccccac
cttatcatgcgctttgcggtgctggacgcggacggcaaggaattggccgccggccgggat
ctggaacggataaagctcgccctgcagggccaggtgcagaccgccctgacccaggcggtg
gacgacgaccgcttcgagcaggagggactgaccgccttcccggcccgggccattccgcag
acctttgccgccaagcgcgccggctttgaggtgaaagcctatccggcgctgagtgatcag
ggcgacagcgtggcgctgcagctgtgcgaggacgagcccagccaggcccgcaccatgtgg
gacggccagtgcaagctgctgcaattgcaactgccgtcgcccatcaagtacctgcaggac
aagctgcccaacaaggccaagctcggcctgtacttcaacccctacggcaaggtgctggat
ctggtggacgactgcatccgcgccggcatccatgcattgatgcgccagtacggggcgccg
gcctggacgccggaggagttcgccgcgctcaaggacaaggtggccggcgagctcaacccc
acggtggcggccatcgccctgcaggtggaagaggtgctgagccgggcccaggccatcaag
aagcggctgaagggcaagatcgatctcgccatggccatggcgatgtcggacatccaggcc
cagctcgacggcctgatcttccgcggcttcgtcaccgacaccggcgccgagcggctgaaa
gatctgagccgctacctggaggccctgagccggcgcctggacaagctggccatagacccg
caccgggaccgtgcccacctgctgaagatccagcaggtgcaaaccgcctaccaggcgctg
ctgaacaagcagcccaggggcaagcccctggcaccggaggtaaaggaggtgcgctggatg
atagaggagctgcgggtatcctacttcgcccagaccctgggcaccccctacccggtgtcg
gacaagcgggtactgcaacagatagaagggttataa
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