Zobellella denitrificans: AN401_08875
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Entry
AN401_08875 CDS
T05100
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
zdf
Zobellella denitrificans
Pathway
zdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AN401_08875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zdf03019
]
AN401_08875
03009 Ribosome biogenesis [BR:
zdf03009
]
AN401_08875
Enzymes [BR:
zdf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AN401_08875
Messenger RNA biogenesis [BR:
zdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AN401_08875
Ribosome biogenesis [BR:
zdf03009
]
Prokaryotic type
rRNA processing factors
AN401_08875
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATG73953
UniProt:
A0A291HP82
LinkDB
All DBs
Position
complement(1902478..1905543)
Genome browser
AA seq
1021 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQKLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALGHLKLPDGMGLIVRTAGVGKSGEEL
EWDLNVLQTHWAAIQEAAESRSAPFLIHQESNVIVRAIRDYLRRDIGEILIDNPVVFERA
KQHIQLVRPDFINRVKLYEGEVPMFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVRQDRARIQLGRISRFGLLEMSRQRLRPSLGESSTHVCPRCLGQGTIRDNESLAL
AILRLIEEEALKDNTGQIHAQVPVDVAAYLLNEKRKSIAGLENRYKVDIFIIPNEQLETP
HFDVTRVRTNDVEDVTSYELKTSVDKPVYSPRQNLAAPRSEQPALQGFAAPAPAPAPAPS
RPEPAAAPVVSQPGLLSRLFSALASWFKGPAEPAQSEPAPAEKPARQPRGNERRERGERR
SNRGSRKPRDEERGGKAPVAQAEPQAEAKTDKPRRERRKPRRDQQPQERAKPQQKETAAV
ELTLVAAPAPAPVQEQELDLEQKEQVVAERRQRRQMRKKVRIEAEGKASEAAVVASEQEA
ADTREPAERRPRRQPKPRAEEVARAEAEGTESGEPVLPHQRGAMPKRKRINEDSRRQRRQ
ESIAALIAEHGEDKWVAQEAEEAAAGSVAQAEAPVAETQAPRPAAEAVEPAATEVEPAPV
AIEARVEPEATQAEAQPAVEPEATRAEAQPAVEPEATRAEAQPAVEPEAKPAEAAPLEAA
PVQHQAEPESEPEVAIEQEAVPPAAEVTEPASAAAPVAQPEAKAAAVQDTAPVNGKVQAS
GLYRAARQASAPMAKPPVVPEVPYVKPDYPPLERQAIATSGRPAGSQAARNVASAPMAKP
E
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgctaatcaacgcaacccaagaagaggagttgcgtgttgccctggtggac
gggcagaaactctacgatctggatatcgagagccccggccacgaacagaaaaaagccaac
atctacaaaggcaagatcacccgggtcgaacccagcctggaagccgccttcgtcgactac
ggcgccgaacgccacggcttcctgcccctcaaggaaatcgcccgcaactacttcccctcc
ggttacagctaccaaggccgtcccaacatcaaggaagtggtgaaggaaggccaggaagtc
atcgtccagatcgacaaggaagagcgtggcaacaagggcgcggccctgaccacctttatc
agcctggcgggctcctacctggtgctgatgcccaacaacccccgcgccggcggcatttcc
cgccgcatcgagggtgacgagcgcaccgaactgaaagaagccctggggcacctcaagctg
cccgacggcatgggtcttatcgtgcgcaccgccggtgtgggcaagtccggcgaagagctg
gagtgggacctgaacgtactgcaaacccactgggccgccatccaggaagcggccgagagc
cgttccgcccccttcctgatccatcaggaaagcaacgtcatcgtccgcgccatccgcgac
tacctgcgccgggacatcggcgagatcctgatcgataaccctgtggtgttcgaacgggcc
aaacagcatatccagctggtgcgtccggatttcatcaacagggtcaagctgtacgagggc
gaggtgcccatgttcagccactaccagatcgagagccagatcgagtccgccttccagcgg
gaagtgcgcctgccctccggcggcagcatcgttatcgatccgaccgaggccctgaccagc
atcgacatcaactcctcccgcgccaccaagggcggcgatatcgaggaaaccgcgctgcag
accaacctggaagcggcggaagagatcgcccgccagctgcgcctgcgcgacctgggcggc
ctggtggtgatcgactttatcgacatgaccccggtgcgccaccagcgggaggtggaaaac
cgcctgcgcgacgccgtgcgccaggaccgggcccgcatccagctgggccgcatctcccgc
tttggcctgctggaaatgtcccgccagcggctgcgcccctcgctgggcgagtccagcacc
cacgtctgcccccgctgcctgggccagggcaccatccgcgacaacgagtcactggccctg
gccatactgcgtttgatcgaggaagaagcgctcaaggacaacaccggccagatccatgcc
caggtgccggtggacgtggccgcctacctgctcaatgaaaagcgcaagtccatcgccggg
ctggaaaaccgctacaaggtggatatcttcatcatccccaacgagcagctggaaaccccc
cacttcgacgtaacccgggtgcgcaccaacgacgtggaagacgtcaccagttacgagttg
aaaaccagcgtcgacaagccggtatacagcccccgccagaacctggccgcgccccgcagc
gagcagcctgcgctgcagggctttgccgccccggcgcccgcgccggcgccggcacccagc
cgtcccgaacccgcggcggcaccggtcgtcagccagcccggtctgctgagccgcctgttc
tcggccctggccagctggttcaagggtccggcggagccggcacagagcgagccggcgccg
gccgaaaaaccggcccgtcagccccgtggcaatgagcgccgcgaaagaggcgagcgccgc
agcaatcgaggcagccgcaagccgcgtgacgaagagcgcggtggcaaggcgccggttgcc
caggccgagccccaggcggaagccaaaaccgacaagccccgccgcgaacggcgcaagccc
cgccgcgaccagcagccccaggagcgggccaagcctcagcagaaggaaaccgccgccgtc
gaactgaccctggtcgccgcccctgccccggctcctgtccaggagcaggaactggatctg
gagcagaaagagcaggtggtggccgagcgtcgccagcgccgccagatgcgcaagaaggtt
cgcatcgaggcggaaggcaaggcgagcgaagccgctgtggtggcgtccgagcaggaagcc
gccgacacccgggaaccggccgagcgccgcccgcgccgtcagcccaaaccccgggcagag
gaagtcgcccgggccgaggctgaggggaccgagtccggcgagccggtgctgccccaccag
cgcggtgccatgcccaagcgcaagcgcatcaacgaagacagccgccgccagcgtcgtcag
gagagcatcgccgccctgatcgccgagcacggtgaggacaaatgggtcgcccaggaagcg
gaagaggctgccgccggatccgtagcacaagcggaggcgcctgtcgccgagacccaggct
ccccgcccggccgccgaggccgtggaaccggccgccaccgaggtcgagcctgctcccgtc
gccatcgaagcccgggtcgagccggaggccacccaggccgaagcccaacctgcggtcgag
ccggaggccacccgtgccgaagcccaacccgcggtcgagccggaggccacccgtgccgaa
gcccaacccgcggtcgagccggaggccaagcccgccgaggcagcccccctggaagccgct
cccgtgcagcaccaggcggagccggagtctgagccggaagtggccatcgagcaggaagcc
gtcccgcctgccgccgaggtaaccgagccggcaagcgccgcggcgcccgtggcccagccc
gaggccaaggcggccgccgttcaggacaccgccccggtcaacggcaaggttcaggcctcc
ggcctctaccgggccgcccgccaggcgtcggcccccatggccaaaccgccggtggtgccc
gaggtgccctacgtcaagccggactatccgcccctggagcgccaggccattgccaccagc
ggccgcccggccggcagccaggccgcccgcaacgtggcctcggcccccatggccaagccg
gaataa
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