Zobellella denitrificans: AN401_18765
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Entry
AN401_18765 CDS
T05100
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
zdf
Zobellella denitrificans
Pathway
zdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AN401_18765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zdf03019
]
AN401_18765
03400 DNA repair and recombination proteins [BR:
zdf03400
]
AN401_18765
Enzymes [BR:
zdf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AN401_18765
Messenger RNA biogenesis [BR:
zdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AN401_18765
DNA repair and recombination proteins [BR:
zdf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AN401_18765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
zf-CXXC
DUF3304
Motif
Other DBs
NCBI-ProteinID:
ATG75640
UniProt:
A0A291HTZ6
LinkDB
All DBs
Position
complement(4027260..4029086)
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AA seq
608 aa
AA seq
DB search
MTASPDPSDAIAIPDSPLAVLQQVFGYQSFRDGQQEIIEAVIAGRDALVIKPTGGGKSIC
YQIPALLRPGLTVVVSPLISLMKDQVDTLVANGVAAVYINSALSREEMLRHFAALRRGEI
KLLYVSPERLLQHEFMERLGELDLGLFAIDEAHCISQWGHDFRPEYAELGRLKQWFPHIP
VMALTATADEATRRDMLGRLDLTDPLIHIASFDRPNIRYTLVEKFKGIDQLLRYVAEQSG
QCGIVYCSSRKRVEEVAERLLARGHRAASYHAGLPLELRQSVQERFIRDDLDIVVATVAF
GMGIDKPNVRYVVHYDIPKNIESYYQETGRGGRDGLPAEALLLYDPGDVGRVRRLLENSD
NEQQLQVELYKLNVMAAFAESLTCRRQVLLNYFGEYQREPCGNCDICLDPPKRYDGTEDA
QKALSCVYRVGQGFGVMYVVEVLRGAATQRIRDHGHDRLSTYGIGKDKSQEHWVSVLRQL
IHSGLLTQNITRNMVLQLTEAARPVLRGEVRLELAEPRLARVRQKDKGESGLSRAEDRAL
FKELRQLRKQLAEEADVPPYVVFSDATLTELARYRPKTEAELLGINGVGMRKLERFGAAF
LALLRRQA
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactgcctcgcccgacccctccgatgccatcgccattcccgacagcccgctggcggta
ctgcagcaggtgttcggctaccagtccttccgcgacggccagcaggagattatcgaggcg
gtgatcgccgggcgcgatgccctggtgatcaagcccaccggcggcggcaagtcgatctgc
taccagatccccgccctgctgcgcccgggcctcaccgtggtggtgtcgccgctgatctcg
ctgatgaaggatcaggtggatactctggtcgccaacggcgtggccgccgtctatatcaac
agtgcgctgagccgggaggagatgctgcgccacttcgccgccctgcgccggggcgagatc
aagctgctctacgtatcgccggagcggctgttgcagcacgagttcatggagcggctgggg
gaactggatctcggcctgtttgccatcgacgaggcccactgcatctcccagtggggccac
gacttcaggcccgagtacgccgagctgggccggctcaagcagtggtttccccatattccg
gtgatggcgctcaccgccaccgccgacgaggccacccgccgggacatgctgggccggctc
gacctgaccgaccccctcattcatatcgccagcttcgatcggcccaatatccgctacacc
ctggtggaaaaattcaagggcatcgaccagttgctgcgctacgtggccgagcagagcggc
cagtgcggtatcgtctactgctccagccgcaagcgggtggaggaggtggccgagcggctg
ctggcccggggccaccgggccgccagctaccacgccggcctgccgctggaactgcgccag
tcggtgcaggagcgctttatccgcgacgatctggacattgtcgtggccaccgtcgccttc
ggcatgggcatcgacaagcccaacgtgcgttacgtggtgcactacgacatccccaagaac
atcgagtcctactaccaggaaaccggccggggcggacgcgacggcctgccggcggaagcc
ctgctgctgtacgatccgggcgatgtgggccgggtacggcggctgctggaaaacagcgac
aacgagcagcagctgcaggtggagctgtacaagctcaacgtcatggccgccttcgccgag
tcgctcacctgccggcgccaggtgctgctcaactacttcggcgagtaccagcgcgagccc
tgcggcaactgcgatatctgcctggatccgcccaagcgctacgacggcaccgaggacgcc
cagaaggcgctgtcctgtgtctaccgggtcggtcagggcttcggcgtcatgtacgtggtg
gaggtgctgcgcggtgcggccacccagcgcatccgcgatcacggccacgaccggctgtcc
acctacggcatcggcaaggacaagagccaggagcactgggtcagcgtgctgcgccagctg
atccactcgggtttgctcacccagaacatcacccgcaacatggtgctgcagctgaccgag
gcggcccggccggtgctgcgcggcgaggtgcgactggaactggcggaaccccggctggcg
cgggtgcgtcaaaaggacaagggcgaaagcggactgagccgggccgaggacagggccttg
ttcaaggaactgcggcagctgcgcaagcaactggcggaggaagcggacgtgccgccctat
gtggtgttcagcgacgccaccctcaccgagctggcccgctatcggcccaagaccgaagcg
gagctgctgggcatcaacggggtgggcatgcgcaagctggagcgtttcggggcggccttc
ctggcgctgttgcgccggcaggcttga
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