KEGG   Zeus faber (John dory): 307228609
Entry
307228609         CDS       T12102                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
zfa  Zeus faber (John dory)
Pathway
zfa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:zfa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    307228609 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:zfa03400]
    307228609 (tdp1)
DNA repair and recombination proteins [BR:zfa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     307228609 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 307228609
NCBI-ProteinID: XP_079854448
LinkDB
Position
3:complement(22393718..22401830)
AA seq 641 aa
MSQDNQHGRWTISSSDDDDDIPPSNTATSHSPTLTDSNRNSHMPVPLASSKEARTATPPP
PAPAYGVKTEPHPVQVNPAPSPLVTVSEARQAAHAGQLNPVKYESPPPPSGKRKREPDES
GWALSDSDDDDGGDDVKVKGESSGSGQRGAPPGMRPPSPKAKKPKVEKNERPPSPHGRTY
YIDEPDDFYETSIPCLNDTYRLYLNKVTGLDRKYNTGALHIRDILSPLFGTLKESVQFNY
CFDISWMVQQYPPEFRDRPVLLVHGDKREAKAHLLQQAQPFPHVRFCQAKLDIAFGTHHT
KMMLLWYEEGFRVVILTSNLIRADWYQKTQGLWMSPLFPRLPKGSASCDGESPTFFKRDL
LEYLASYRAPEFSDWIQRIEEHDLSETRVYLIGSSPGRYLGSDMERWGHLRLRKLLYEHS
HPIPDEENWPVVGQFSSIGSMGLDKSKWLAGEFQRTLTTIGKSSHRADPPIHLVYPSVED
VRNSLEGYPAGGSLPYSIQTAQKQLWLHSYFHRWKAEATGRSHAMPHIKTYMRASPDFSE
LAWFLITSANLSKAAWGALEKNSTQVMVRSYELGVLFIPAAFNMSSFPVQKNQFPATSSS
AAFPVPFDLPPKHYSSTDQPWIWNIPYSQAPDTHGNIWVPS
NT seq 1926 nt   +upstreamnt  +downstreamnt
atgtctcaggacaatcaacacggcaggtggaccatctccagcagtgatgacgatgatgac
atccctccatcaaataccgccacgtctcattccccaacgctgacagactccaaccgcaac
tctcacatgcctgtcccgcttgcgagctccaaagaggcccgcacggccacgccaccgccg
ccagcgccagcttacggggtgaaaacagagccccatccggtgcaggtgaacccagctcca
tcaccgcttgtcactgtctctgaagctagacaggcagcccacgccggccaattaaatcct
gtgaaatatgaatcccctccgccgccgtctggaaagaggaaaagggagccagatgagtcc
ggctgggctctctcggacagtgatgatgatgatggtggtgatgatgtgaaggtgaagggg
gagagttctggctccggccagcgcggcgctccccccggaatgaggcctccgagccccaaa
gccaaaaagccgaaggtagagaaaaatgagcgtccccccagcccccacggtcgtacgtac
tacattgatgagccggacgacttctatgagaccagcattccgtgtcttaacgacacctac
aggctgtacctcaacaaggtcactgggctggacaggaagtacaacactggggccctgcat
atcagagacatcctctcaccactgtttgggactttaaaagaatcggttcagtttaactac
tgttttgatatttcctggatggttcagcagtacccaccagagttcagggacagaccggtt
ctgctcgtccacggggataagagggaagccaaggctcatctcctccagcaggctcagccc
ttcccccatgtgcggttctgtcaggccaagctggatattgcttttgggactcaccacacg
aaaatgatgctgctgtggtacgaggaaggcttccgggtcgtcatactaacctccaacctc
atcagagctgactggtaccagaaaacccaggggttgtggatgagcccgctgtttccacgg
ttaccgaagggaagcgcttcctgtgacggagagtctccgaccttcttcaagcgggatctg
ctggagtacttggcgtcgtaccgagcgccggaattcagcgactggatccaacggatcgag
gagcacgatctgtccgagacaagggtgtatctcatcggctccagcccagggaggtacttg
ggctccgacatggagcgctggggccacctccgactcaggaagctgttgtacgagcactca
catcccattccagatgaagaaaactggcccgtggttggccagttctccagcatcggttcc
atgggtttggataagagcaagtggctggcaggggagttccagcgcacgctgaccacaata
gggaagtcctctcaccgggcggaccccccgattcacctggtgtatccctcagttgaggac
gtcagaaatagcctggagggataccctgcggggggctccctcccctacagcatccaaact
gcccagaagcagctgtggctccactcctacttccacaggtggaaggcggaggcgaccggg
cgaagtcacgccatgccgcacatcaagacctacatgagagcgtcaccagacttcagcgag
ctggcctggttcctcatcacaagtgccaatctgtccaaggcagcgtggggagcgctggag
aagaacagcacccaggtgatggtccgctcctatgaactgggcgtgctcttcatccctgcc
gcctttaacatgtcttcatttcctgtgcagaagaatcagtttcctgccacctcttcctcc
gcagctttccctgtgccatttgacctacctccgaaacactactctagcacagaccagccg
tggatctggaacattccgtacagccaggctcctgacactcatggcaacatctgggtcccc
tcctga

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