Zeus faber (John dory): 307229562
Help
Entry
307229562 CDS
T12102
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
zfa Zeus faber (John dory)
Pathway
zfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
307229562 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zfa03019
]
307229562 (skic2)
Enzymes [BR:
zfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
307229562 (skic2)
Messenger RNA biogenesis [BR:
zfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
307229562 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
307229562 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
Motif
Other DBs
NCBI-GeneID:
307229562
NCBI-ProteinID:
XP_079855688
LinkDB
All DBs
Position
1:complement(14270623..14295256)
Genome browser
AA seq
1247 aa
AA seq
DB search
MDRTDLPPIGPTDLPLSLLEMGCSGRFELITHPLPHDQPLPPQSTLPHGLPPTSVNLETE
VEKQFLHDPAWLPIHDKDAAFQKFLDVFQRKVHVDTLLHCSPSPLHSGLSVVRDPTTGML
LDFTEVLLADTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFMPGGMEELTLEQIKNKSEF
EEDIDFENGLLKVPPGLKAGMDFSDKDTKAAKAEVNLMSLLSSLDDIIDLEPETEEKPKE
EKSIAAPNLPRTNSLEDLGIKDTGSSSNTSGKGKAVKSKPEVDQEDNKKWAIPVDISSPC
TDFYKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHM
TRTIYTSPIKALSNQKFRDFKSTFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNGSEV
IRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKKR
HIYVISTAKRPVPLEHFLYTGNSSKTQKEMFLLLDATGNFLTKGYYNAVDAKKERTSKHA
QSFGTKNTSQHTTANQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDENARSLASMDLTS
SVEKAEIHSFFQKSLSRLRGGDRQLPQILVMRDLLKRGVAVHHSGILPILKEVIEMLFSR
GLVKVLFATETFAMGVNMPARTVIFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDPTG
TVIILCKAGVHDMGDLHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSES
HRDPQTHEKRIRQLRQTLSSLPPLDTQGQLSDLELYYHTVTELRITTEALQRATLESVNG
LKALSVGRVIVVNNKQHLNALGVILQVSTDAVNRTFTALVICEKGNEEGNNTDANAGASS
HLYSTALFIPEGPCSHTVLKLSLRDIMAITVKTLKVIPDRIIDNYNKRQQLRFRSDPPGQ
AISTATQELLRLAEGNPDGLATLDPVNDLQLKSVDVVEDSMRLRVLRDSLKEFNCIHCPT
FAQQYTRVHQRMSVQEELDKLLFLASDQSLSLLPEYHQRIKVLQSLQYVDASGAVQLKGR
VACQISSHELLLTELLFENALSTLAPEESAALLACLVFTQNTQVVPHITNTLQEGIDRVL
AVAQRIGDLQKDCGITQSAEEFVSQFKFGLTEVVYCWARGMPFGEIAHLTDVQEGTVVRC
IQRLDEVLKEVRQAARIIGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggacaggacggatctcccccccattggtcccaccgacctgccgctctctctgctggag
atgggatgctccggcaggttcgagctgatcacgcatcctctgccccatgaccagccctta
cctccccaaagcacgctcccccatggactccctccaaccagtgtaaacctggagacagaa
gttgagaaacagtttctgcatgaccccgcctggctccccatacatgacaaggatgctgcc
ttccagaagtttcttgatgtgtttcagaggaaggtccacgtggacactctgctccactgc
tccccgtctccactgcactctggcttgtctgtcgtccgcgatcccaccacgggaatgctg
ctggacttcacagaggtgttattagcagacaccggcctatcggcaaagaattcactctct
ttacagcgccagccagggcctccttcagagagcctgcgaggaagcaacaccaactacccc
tttatgcctggaggaatggaggaacttacacttgagcaaattaagaacaaatcagagttt
gaggaggatatagactttgagaatggtttacttaaagtcccccctggacttaaagcaggg
atggatttcagtgacaaagataccaaagcggcgaaggctgaggtcaacctcatgtccctc
ttgtcctctcttgatgacatcatcgatttggagcccgagacggaagagaagccaaaggaa
gagaaaagtatagcagcccccaacctccccagaacaaatagtttggaagacctgggcatt
aaggatactggatcgtcctctaacacatcagggaagggaaaagctgtgaaatccaaacca
gaagtggaccaagaagacaacaagaagtgggccatccctgtggacatcagctccccctgc
acagacttctacaaacgaatccccaatccagccttcaagtggccgtttgagctggatgtg
ttccagaagcaggctgtgctgcggctggaggctcacgactccgtgttcgttgcagcgcac
acctcagctggcaaaacggtggtggcggagtacgccatcgccctctcgcagaaacacatg
accaggaccatctacacctcccctatcaaggccctgtccaatcagaagttcagggatttc
aagagcacctttggtgacgttggcctcctgacaggggatgtgcagctcagccccgaggcc
tcctgtctcatcatgaccaccgagattctgaggtccatgctttacaacggctcagaggtc
atcagggacctagagtgggtgatattcgatgaggtccactacatcaatgatgccgagaga
ggcgttgtgtgggaggaggttctgatcatgcttccagaacacgtcagcatcattctgctc
agcgccaccgtgccaaacgctgtggagttcagcgagtggatcggtcgtatcaagaagagg
cacatctacgtgatcagcacggcaaagagacccgtgcctctggagcacttcctgtacacg
ggaaacagctccaagacgcagaaggagatgttcctcctgctggatgccacagggaacttt
ctcaccaaagggtactacaacgctgtggatgccaagaaggaacgcacgagcaaacacgcc
cagtcatttggcacaaagaacacgtctcagcacacaacagccaatcaggacagagcggtg
tggctctccctcctccacttcctgtcccagcggcagcagacgcccgtggttgcgttcacc
ttctcgcgaacacgctgcgacgagaacgcgcgctcgctcgcctccatggacctgaccagc
tctgtggagaaggcggagattcactccttcttccagaagagcctgagtcgcctgcgcggg
ggagacagacagctcccacagatcctggtgatgagggacctgctgaagaggggagtcgcg
gtccatcacagcggcatcctgccgatcctgaaggaggtcatcgagatgctcttttcacgc
gggctggtcaaagttctgtttgccactgagacttttgctatgggagtgaacatgcctgct
agaacggtcattttcgacagcataaggaaacacgatggaacaggcttccgaaacctgcta
cccggggagtacattcagatggcaggtagagcgggacgtagaggtctggaccccacgggc
acggtcatcatcctctgcaaggccggagtccacgacatgggcgatctgcacgtcatgatg
ctggggaaacccaccgtgctgcagtcccagttcagactgacctacaccatgatcctcaac
ctgctgcgggtggaggcgctccgagtcacagacatgatgcggagaagcttctccgagagc
cacagagacccccagacccatgagaagaggattcggcagttgcggcagacgttatcgtct
ttacctcctctggacacccagggccagctgtcggacctggagctgtactaccacaccgtt
accgagctgcgcatcaccaccgaggccctgcagcgtgctactctggagtctgtcaacggc
ctgaaagctctgtctgtcggccgagtcatcgttgttaacaacaaacagcatctcaacgcc
ctgggagtcatcctgcaggtgtccactgacgccgtgaatcgcacgttcacggctctggtt
atctgtgagaagggcaacgaagaaggaaacaacaccgatgcaaacgccggcgcctcctct
cacctctacagcaccgccctcttcatacctgaagggccgtgcagccacaccgtcctgaag
ctgagtttgcgcgatatcatggccatcaccgtgaaaaccctgaaggtcattcctgacagg
atcatcgacaactacaacaagaggcagcagctgcgcttcaggagcgaccctccaggccaa
gccatctccaccgctacccaggagcttctgcgattggccgagggcaaccccgacgggctc
gcaaccctcgaccccgtgaacgacctccagctgaagagtgtggacgtggtggaggactcc
atgaggctgcgtgtgctgcgggacagtctcaaggagttcaactgcatccactgccccacc
ttcgcccagcagtacactcgtgtgcaccagaggatgagcgtgcaggaggagttggacaag
ctgctgttcctggcatcggaccagtccctgtctctgctgccggagtaccaccagaggatc
aaggtcctgcagtcgctgcagtacgtggacgccagtggcgcggtgcagctgaagggccgc
gtggcgtgtcagatcagcagccacgagctgctgctcaccgagctgctgtttgagaacgcc
ctgagcacgctggcgcccgaggagagcgccgccctgctggcctgcctggtgttcacacag
aacacacaggtggtgccgcacatcaccaacacactgcaggagggcatcgatcgcgtgctg
gcggtggcccagcgtattggcgacctgcagaaggattgtgggatcacgcagtcggcggag
gaatttgtcagccagtttaaatttggcctgacagaagtggtctactgctgggccagaggc
atgccgttcggcgagatcgcccatctgacggatgtgcaggagggcacggtggtgcgctgc
atccagcgtctggacgaggttctgaaggaggttcgccaggcggcacgcatcatcggggac
tcggtgctcgggagcaagatggagaaggcctcgctggccatccgcagggacatcgtcttc
acagcctccctctacacccattga
DBGET
integrated database retrieval system
