Zeus faber (John dory): 307230430
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Entry
307230430 CDS
T12102
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform 1
KO
K19719
collagen type II alpha
Organism
zfa Zeus faber (John dory)
Pathway
zfa04510
Focal adhesion
zfa04512
ECM-receptor interaction
zfa04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
zfa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
307230430 (col2a1b)
04518 Integrin signaling
307230430 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
307230430 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zfa00536
]
307230430 (col2a1b)
Glycosaminoglycan binding proteins [BR:
zfa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
307230430 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
307230430
NCBI-ProteinID:
XP_079856950
LinkDB
All DBs
Position
5:17834115..17879574
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AA seq
1489 aa
AA seq
DB search
MFSFVDSRTVLLLAATQVLLLAVVRCQDDDQDEFSCVQDGQRYSDKDVWKPEPCRICVCD
TGTVLCDEIICEELKDCPKPEIPFGECCPICAVDQPPPIGTPGAKGQKGEPGDITDVVGP
RGPSGPMGPPGEQGARGSRGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGN
FAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEPGEPGQSGP
LGPRGPSGPSGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGIKGHRGYSGLDGA
KGETGSAGSKGESGSPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLPGPAGPPGP
VGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIPGA
KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEFGPVGP
QGAPGPAGEEGKRGPRGESGAAGPLGPHGERGTPGNRGFPGQDGLAGPKGAPGERGPSGA
GGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARGQ
PGVMGFPGPKGATGEPGKPGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGSAGERGEQGQ
PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQGP
RGLPGTPGTDGPKGAIGPAGTLGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEGA
PGKDGSRGLTGPIGPPGPGGPNGEKGESGPSGPSGAPGTRGAPGDRGETGPNGPAGFAGP
PGADGQPGMKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVFGPKGARGAQGPPGATGF
PGAAGRVGPPGPNGNPGASGPAGPPGKDGPKGVRGDGGPTGRQGDAGLRGPAGTPGEKGD
PGEDGPPGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDRGP
PGPVGPPGLSGPSGEPGREGNPGSDGPPGRDGSAGIKGDRGNTGPAGAPGAPGSTGAPGP
VGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGESGERGQKGHRGFTGL
QGLPGPPGQAGDQGATGPSGPSGARGPPGPIGPAGKDGSNGLPGPIGPPGPRGRSGDSGP
AGPPGNSGPPGPPGPPGPGIDMSAFAGLSQTEKSPDPMRYMRADQASGNLRQHDAEVDAT
LKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCNME
TGESCVYSKPSSIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMTFL
RLLSTEASQNLTYHCKNSVAYMDGSMGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDGC
TKHTGNWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattccaggactgtactgctcctcgcagcgacccaagtccttctg
ttggccgtggtgagatgtcaggacgacgaccaggatgaatttagctgtgttcaagatgga
cagcgatatagcgacaaggacgtatggaaaccagagccttgtcgtatctgtgtgtgtgac
acgggaactgtcctctgcgatgagataatctgcgaggaactcaaagactgccccaaaccc
gaaatcccatttggagagtgttgccccatctgcgcagtcgaccagcccccacccattggc
acacctggagccaagggtcaaaaaggtgaacccggagacataactgatgtggtaggacca
agaggaccatctggcccaatgggcccgccgggagagcagggagcacgcggctcgagggga
gacaaaggcgagaagggaagccctgggccccgtggcagagacggtgaacctggaaccccc
ggaaaccccggcccccctgggcctccaggacctaatgggccccctggccttggcggaaac
tttgctgctcagatggccggtggattcgatgagaaggccggcggcgctcagatgggtgtg
atgcagggaccgatgggcccaatgggacctcgaggaccacctggccccagtggatcacct
ggcccgcagggtttccaaggtaaccctggagagcctggagagcctggacaatctggcccc
ttgggtccccgtggcccctccggaccttctggaaaacctggagatgatggtgaggctggc
aaacctggtaaatctggtgaacgtggaccacctggccctcagggagctcgcggcttcccg
ggaactcccggtctgcccggcatcaagggacacagaggatattcaggtctggatggcgca
aagggagagactggatctgccggttccaagggcgagtctggatctcccggtgagaacggc
gcccccggcccgatgggacctcgtggtctgcccggtgagagaggtcgccccgggcccagc
ggttctgccggtgcacgtggaaacgatggtctgcctggtcccgccggtccccctggcccc
gttggtccatctggtgctccaggcttccctggatctcctggctcaaagggagaagctgga
cccactggcgcacgtggacctgagggggcgcaggggccccgcggagagtccggcacccct
ggatcttctggaccatccggcgcttctggaaaccctggtactgatggtatccccggagcc
aagggatcagctggcgcacctggtattgctggagctcctggtttccctggaccccgtgga
cctcccggaccccagggggccactggtcctcttgggcccaaaggaacatctggagatcca
ggtatcccaggattcaaaggagaagctggacccaaaggagagtttggaccagttggtcct
caaggagcccccggaccagcaggagaggagggcaagcgaggacccagaggagagtctggt
gctgctggacctctcggaccccatggagaaagaggcactcctggtaaccgtggtttccct
ggtcaggatggtctggctggtcccaagggagcccccggtgagcgtggtccatccggcgcc
ggcggtcccaaaggtgctaatggtgaccccggtcgtcctggagagcctggtctgcctggt
gccaggggtcttactggtcgccctggtgatgctgggccacaaggcaaagttggaccctct
ggagccgctggtgaggacggtcgccctggaccccctggaccccagggagcccgtggacag
cctggtgtgatgggattccctggacccaagggagccactggcgagcctggaaagcctggt
gagaagggactgctcggcgcccccggcctgagaggtctgcccggtaaggatggagagacc
ggagcggctggacctcctggccctgccgggtctgctggagagagaggagagcaaggacag
cccggtccttctggtttccagggtctccctggaccccctggtccccccggtgaaggaggc
aagcctggagatcagggcgttccaggagagggtggagctgccggcgctaccggacccagg
ggcgagcgtggtttcccgggagagagaggaggcgccgggcctcagggtctgcaggggccc
cgcggtctgcccggaacccccggaaccgacggacccaagggagcgatcgggcccgcaggt
accctcggagcccagggaccccccggcctgcaaggcatgcctggagagagaggagcctcg
ggcatcccaggacccaagggagacagaggtgacaatggagagaaaggacccgagggtgct
cccggtaaagacggatctagaggtctcactggtcccatcggtcctcctggtcccggtggc
cctaatggagagaagggtgaatctggtccttctggaccttctggagcccctggtacccgt
ggcgcgcctggtgaccgtggggagactggacctaatggacctgctggatttgctggacca
cctggtgccgacggtcaaccaggaatgaagggagagcagggagagggtggacagaagggc
gatgccggagcccccggaccccagggaccatccggagcccccggaccttcgggtcctacc
ggtgtttttggacccaaaggagctcgtggtgcgcagggacctccgggtgccactggtttc
cctggagcggctggcagagtcggaccccctggccccaacggaaatcctggagcctctggc
cccgccggacctcccggaaaagatggccccaagggtgtgaggggagacggtggacccacc
ggccgacagggtgatgctgggctccgtggtcccgctggcacccctggagagaagggagac
cccggcgaggacggtccccctggtcccgatggtccctcaggtcctcagggtctggctgga
cagcgtggtatcgtgggtcttcctggacagcgtggcgagagaggtttccctggtctgcct
ggaccatctggtgagcctggtaagcagggagctcctggaggtgctggcgaccgtggaccc
cctggacccgtcggaccccctggactgagtggaccttctggagagcccggcagagagggt
aaccccggatccgatggaccccccggcagagatggctctgctggaattaagggtgaccgt
ggcaacactggccccgctggagcaccgggagccccaggctctactggagcacccggtcca
gttggccccactggcaaacagggagacagaggagaggctggcgcccaaggacctgccgga
cctgcaggacccgctggagccagaggaatggctggaccccaaggacctcgtggcgacaag
ggtgaggctggcgagtctggagagagaggacagaagggacacagaggcttcaccggtctg
cagggtctgcctggacccccaggtcaagctggagaccagggtgctactggaccttctgga
ccttctggagccagaggaccacctggacctattggccccgctggaaaggatggcagcaac
ggtctgccaggacccatcggaccccctggacctcgtggtcgctctggagactctgggcca
gctggaccccctggaaactccggaccccccggtccccctggtccccccggccccggcatc
gacatgtccgccttcgccggcctgtctcagaccgagaagtccccggatccgatgaggtac
atgagggccgaccaggcttctggaaacctccgccagcacgacgccgaggtggacgccacg
ctcaagtccctcaacaaccagatcgagaacatccgcagccccgagggatccaagaagaac
ccagcccgcacctgcagagacctgaagctgtgccaccccgactggaagagcggagagtac
tggatcgaccccaaccagggctgcaccatcgacgccatcaaagttttctgcaacatggag
acaggggagtcctgcgtctactccaaaccctccagcatcccacgcaagaactggtggtcc
agcaagagcaaggaccgcaagcacgtctggttcggagagaccatgaacggaggattccac
ttcagctacggtgacgacagcctggcgcccaacacggccgccatccagatgaccttcctg
cggctgctgtccaccgaggcgtcccagaacctcacctaccactgcaagaacagcgtggcc
tacatggacggctccatgggcaacctgaagaaggccgtgctgctgcagggctccaacgac
gtggaaatcagggccgagggcaacagccgcttcacctacagcgtcatggaggatggctgc
acgaaacacacagggaactggggcaagacggtgattgagtacaggtcgcagaagacctcc
cgtctgcccatcgtggacattgcccccatggacatcggtggagcagaccaggagttcgga
gtcgacgtcggagccgtctgcttcttgtaa
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