KEGG   Zeus faber (John dory): 307232517
Entry
307232517         CDS       T12102                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
zfa  Zeus faber (John dory)
Pathway
zfa03030  DNA replication
zfa03410  Base excision repair
zfa03420  Nucleotide excision repair
zfa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:zfa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    307232517 (rfc5)
   03410 Base excision repair
    307232517 (rfc5)
   03420 Nucleotide excision repair
    307232517 (rfc5)
   03430 Mismatch repair
    307232517 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zfa03032]
    307232517 (rfc5)
   03036 Chromosome and associated proteins [BR:zfa03036]
    307232517 (rfc5)
   03400 DNA repair and recombination proteins [BR:zfa03400]
    307232517 (rfc5)
DNA replication proteins [BR:zfa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    307232517 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    307232517 (rfc5)
Chromosome and associated proteins [BR:zfa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    307232517 (rfc5)
DNA repair and recombination proteins [BR:zfa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     307232517 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    307232517 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_22 AAA_lid_RFC1 AAA_14 AAA_24 RuvB_N DEAD AAA_16 ResIII AAA_assoc_2 DUF815 PhoH AAA_7 AAA_30 ATPase_2 AAA_5 nSTAND_NTPase5 AAA_19 TIP49 nSTAND3 AAA_2 DNAX_ATPase_lid Thioredoxin_6 Glyco_hydro_57 DUF4119
Other DBs
NCBI-GeneID: 307232517
NCBI-ProteinID: XP_079859678
LinkDB
Position
7:complement(4545180..4554721)
AA seq 335 aa
MASSSTAPVPARNLPWVEKYRPHKLDDLISHKDILTTIQRFISEDRLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSHDQMIPRL
EHVIQQESIDVTPDGMKAVVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRAD
IANILDWSLNKDFTSAYKQILHLKTLKGLALHDILTEVHLLVHRVDFPPAIRMSLLIKLA
DIEHRLASGTNEKIQLGSMVAAFQAVRDLVVSEAP
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcctccagcagcacggcgccggtgccggccaggaatttaccatgggttgaaaaatac
agaccacataaacttgacgacctgatctcccacaaggacattttaaccacaattcagagg
ttcatcagcgaggaccggcttccccacctcctgttttacggcccaccagggacagggaag
acctccaccatcctggcgtgtgcccggcagctttacaaggacaaagagttcaactccatg
gtgttggagctcaacgcctcggacgacagaggtatcgatgtggtacgaggccccatcctg
agttttgcaagcacccggaccatattcaagaaaggctttaagttggtgatactcgacgaa
gcagatgccatgacccaagatgcccagaatgcattgcggcgagtgattgaaaagttcacg
gagaacacacgtttctgcctcatctgcaactacctgtccaagatcatccccgcactgcag
tcccgttgcacccgcttccgcttcggcccgctgtcccacgaccagatgatcccccggctg
gagcatgttatccagcaggagagcatcgacgtaactccagatggaatgaaagctgtggtg
acgctgtcgtcaggagacatgagaaggtccctcaacatcctgcagagcaccagcatggcg
tatgggaaggtgacggaggacacagtgtacacctgcacgggccacccgctgcgcgccgac
atcgccaacatcctcgactggtccctcaacaaagacttcacctcggcctacaagcagatc
ctccacctgaagaccctgaagggcctggccctccacgacatcctcactgaggttcacctg
ctggtgcacagagtggattttccgcctgctattcggatgagtctgctcatcaaactggct
gatattgaacacagattggcctccggcaccaacgagaagatccagctcggttccatggtg
gctgcgttccaggcggtcagggacctggtggtcagcgaggctccctag

DBGET integrated database retrieval system