Zeus faber (John dory): 307237060
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Entry
307237060 CDS
T12102
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform 1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
zfa
Zeus faber (John dory)
Pathway
zfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307237060 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zfa03041
]
307237060 (ddx42)
Enzymes [BR:
zfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
307237060 (ddx42)
Spliceosome [BR:
zfa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
307237060 (ddx42)
Complex B
307237060 (ddx42)
Complex C
U2 SnRNP specific factors
307237060 (ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
307237060
NCBI-ProteinID:
XP_079865801
LinkDB
All DBs
Position
11:complement(14370739..14382679)
Genome browser
AA seq
953 aa
AA seq
DB search
MNWNKGGPSGKRGFGFGGFSLGGGGKKEEPKLPPKTHMSFGPPGSAGSYGKNQQLPSFYK
IGTKRANFDEENAYFEDDEEESSSSVDLPYIPAENSPTRQQMQGGDGGSDSDDDPLDAFM
AEVETQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTPEEEEEL
VDYDSDGNPIAPTTKKIILPLPPIDHSEIDYPHFEKNFYNEHEELNSLTATQVVELRHKL
NLRVSGALPPKPSTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALGGRDMIGIAKT
GSGKTAAFIWPMLVHIMDQKELEPGEGPIAIIVCPTRELCQQIHTECKRFGKAYSLRSVA
VYGGGSMWEQAKALQDGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEY
QVRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEILL
SGTDKWTWLTRRLVEFTSSGSVLIFVTKKANSEELANNLNQDGHNLGLLHGDMDQSERNK
VIADFKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAY
TLLTNKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKMNIGGGGLG
YRERPGLGADSSERSSGMSMSSSSFESFSKPTAGAMGDRMSAMKQVFQAQYKNHFVAASG
IAPKLTTKSNSSSGWTSAGSLSSIPTEAAEASDRSRAAAASMAPPPSFSVGTKMAGFTSA
GSLSSVPSSPTTLPHSYPPVASPVAPPVAPPSPKDNSRDRHGEDRGRHGDGHYRHSDRSD
RSDRSDRHSGGGGGSGGGGGGGGSGGGGGGGERDRHSDRYGDRDRDRYGDRERHGSSRHG
EGRNGDGSRRDRDDGRSERECGDRASGEAKGDRGEDSFAVPDPPRRKKSRWDN
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggcggtccgagtggtaagcgaggtttcgggtttgggggtttttcc
ctcggaggcggagggaaaaaagaagaacccaaactgcctcccaaaacccacatgtcgttc
gggccacccggctcggcagggagctacggcaagaaccagcagctcccttcgttctacaaa
ataggaaccaaaagagccaattttgatgaagagaatgcgtattttgaagacgatgaagag
gagtctagtagcagcgtggatctgccatacatccccgctgagaactcgcctacaaggcag
cagatgcagggaggtgatggcggctccgacagcgacgacgacccgctagatgccttcatg
gcagaggttgagacccaagcagccaaagacatgagaaaactagaggagaaagagaaggag
aaaaagtctgccaagggtattcgcgatgacattgaagaagaagatgaacaagaagcctac
ttccgctacatggcagagaaccccacagcggggttgactcccgaggaggaggaggagctc
gtcgactacgacagcgatggcaaccccatcgctcccaccaccaagaaaatcatcttgccc
ctccccccaatcgaccactccgagattgattatccacactttgagaagaacttctacaat
gagcatgaagagctcaacagcctgacagcaactcaagtggtggagctgagacacaagctc
aacttgcgggtgtctggagccctccctcccaagccgagcacaagttttgcccactttggg
tttgatgagcaacttatgcaccagattcgcaagtcggagtacactcagcccacgcctatt
cagtgccagggtgtgcccatcgctctggggggtcgggacatgatcggtattgctaaaact
ggcagtggaaagactgcagcatttatctggcccatgctggttcacatcatggaccagaag
gaactggagcctggagagggaccgatcgcaatcatagtgtgcccaaccagggagttgtgc
cagcagatccacactgagtgtaagcgttttgggaaagcctactccctgcgctcagtcgcg
gtgtacggaggcggcagcatgtgggagcaggccaaagctctgcaggacggagccgagatc
gtggtgtgcaccccgggtcgtctgatagatcacgtgaagaaaaaggccacctcgctgcag
agagtgacgtatctggtgtttgatgaagccgatcgcatgttcgacatgggcttcgaatat
caagtgagatctattgcaagccatgtccgtcccgacagacagactcttctgttcagcgcc
actttccgaaagaagatcgaaaggcttgccagagacatcttggtggatcccatccgtgtt
gtgcagggagacatcggagaggccaacgaggacgtgacccaagtggtggagatcctgctg
agcggaaccgacaagtggacctggctgacccggcgcctggtggagttcacctcctccggc
tcggtcctcatcttcgtcaccaagaaggccaacagcgaggagctggccaataacctcaac
caggacggccacaacctgggcctcctgcacggcgacatggaccagagcgagaggaacaag
gtcatcgccgacttcaaaaagaagaacttgcccattctggtggccaccgatgtggcagct
cgcggactggacatcccatcgatccgcacggtggtgaactacgacgttgcaagagatata
gacacgcacacgcacaggatcgggcgaacgggtcgtgccggagagaagggcgtggcctac
acactcctcaccaataaggacacgtcgttcgccggcgacctggtccggaatctggaggga
gccaatcaaagtgtttctaaagagctgatggacttggctatgcagaacccctggtttagg
aagtctcgttttaagggtggtaagggaaagaagatgaacattggaggagggggtctaggg
tacagagagaggccaggcctgggggccgacagctctgaacgcagttctgggatgtctatg
tcttctagtagctttgaaagcttcagcaaacccaccgctggagccatgggagaccgcatg
tcggcaatgaagcaggtcttccaggcacaatacaagaatcactttgtggctgcgtctggc
atcgctcctaagctgaccaccaagtccaacagctcgtctggttggaccagcgccggtagt
ctgagctccatccccacagaggccgccgaggcatctgacaggtccagagcggctgccgcc
tccatggctcccccaccctccttcagcgtgggaaccaagatggccggcttcaccagcgcc
ggttctctgagctctgttcccagcagtccaaccacactgccgcacagttaccctccggtg
gcttctcccgtggcacctccggtggcgcctccctcgccaaaggacaactcccgagaccgg
cacggggaggacaggggccgtcacggagatggccactaccggcatagcgacaggagtgac
cggagcgaccggagcgaccggcacagtggtggtggcggtggcagtggtggcggcggtggc
ggcggtggcagtggtggcggcggcggcgggggggagcgggaccgtcacagcgatcgctac
ggagacagagaccgcgatcggtatggggacagggagcgccacggcagcagccgccacgga
gagggtcgcaacggagacggaagcagaagggaccgagacgacgggaggagcgagagggag
tgcggggacagggcgtccggggaggcaaagggggaccggggtgaggacagtttcgctgtc
ccggatccgccccgacgcaaaaagagcaggtgggacaactga
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