Zeus faber (John dory): 307244583
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Entry
307244583 CDS
T12102
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform 1
KO
K06823
collagen type XVIII alpha
Organism
zfa Zeus faber (John dory)
Brite
KEGG Orthology (KO) [BR:
zfa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zfa04147
]
307244583 (col18a1a)
00535 Proteoglycans [BR:
zfa00535
]
307244583 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
zfa00536
]
307244583 (col18a1a)
Exosome [BR:
zfa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
307244583 (col18a1a)
Proteoglycans [BR:
zfa00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
307244583 (col18a1a)
Glycosaminoglycan binding proteins [BR:
zfa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
307244583 (col18a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
307244583
NCBI-ProteinID:
XP_079875947
LinkDB
All DBs
Position
18:complement(23497063..23592538)
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AA seq
1378 aa
AA seq
DB search
MRCSPGLERLLCCALLLCAPAASQWRDESGVSLLEIIGDPPPPEIVRVDGPDSSPGYVFG
PDANTGQLARAHLPSPFYRDFSLIFHLKPTSDYGGVVFSITDSSQQIMYVGVKLSAVQGG
KQNVILYYTEPDSQESYQAASFPVPSLRDAWTRFSIAVQDEKVTFYLNCDVEPQVVRFER
SPDEMELEAGAGLFVGQAGGADPDKYMGLIGELRVVGDPRAAERHCEEDEDDSDVASGEG
SGDEGRRVTPEKGSWTTDRRGDHVATDTRGDRVATTPPSSRPIQQPPVTNRHELSVERET
GRLAAKGDKGAQGDRGEKGDRGPIGPKGESGSGSISRGGARGEKGEPGETGVKGSAGFGY
PGKKGEAGTPGPPGPPGPPGPTAELLERSDGSVVERLAGPRGPPGPQGLPGPQGQPGADG
EAGDPGEDGSAGAVGPPGFPGTPGDAGVRGEKGDRGDGHPGPRGPPGPPGPPGPGSRSTF
VDMEGSGFPDLESVRGQPGVPGPPGPPGPPAPAAPVVVGTAPASGASGPPGRDGATGQPG
LPGLPGTDGLPGTLGPRGQKGDSGELGLPGAIGEKGAPGVPGSVGPPGEGGLAGLPGPMG
PVGPPGRPGPPGPSYRVGFDDMEGSGGAFSNGLPGARGPEGTQGAPGIPGLPGKAGLPGV
AGQGGGEGPQGRDGRPGLDGFPGPPGPKGDTGDRGETGQPGRDGNGLPGPPGLPGPPGQI
IYQTSGGYDGAVGSVGPQGGPGSPGQAGFPGPIGPKGDRGDAGQPGYGAKGEKGEPGLVV
GPDGNLLYLGALSGLQGDRGPSGPVGPPGPYGPPGLKGEIGMPGRPGRPGVNGYKGERGD
PGTGSGYAYPGPPGPPGPPGPPGPPVPVDRFNRYDTSRNYPATKGEKGDQGDRGAPGIPG
SGSTFDIYAFKNELKGERGDGGVKGEKGEPGGGGYYDPRFGGVQGPQGPPGNPGLTGPKG
DSITGPPGPQGPSGTPGIGYDGRPGAPGSPGPPGPPGSPSLPGAYRPNHAINVPGPPGPP
GPPGTPGHTSGVTVLRSYDTMVATARRQAEGSLIYVLDKADLYLRVRNGLRQVMLGEYSP
FYRDLENEVAEVQPPPVVSYPQSQDQSINNGAGHYSQGGAAVGPIEPPPYQPPAEPPRRE
PTHPVPRYPPHYDPRFPDPRYHGQTEGRVNPPQPGNRYPVTPQRRPSPPVPQPTGHVHTS
GPGLHLIALNAPQTGNMQGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDR
DSLPIVNLKDQVLFSSWESVFSDDNSKMRDNAPIYSFDGRDILRDSAWPEKLVWHGSNAR
GHRQTDNYCETWRAGVRAVTGLASALASGHLTQHTPASCSSSYIVLCIENSYITHSKK
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgaggtgttccccggggctggagcgcctgctctgctgcgccctcctgctctgcgctcct
gcagcgtcgcagtggagagatgagagcggagtctcgctgctggagatcatcggcgacccc
cctccgcccgagatcgtccgggtcgacgggccggacagcagccccggctacgtgttcgga
cccgacgccaacacgggccagctggcgcgcgcccacctgcccagccccttctaccgggac
ttctccctcatcttccacctgaagcccacctcggactacgggggcgtggtcttctccatc
accgactcctcgcagcagatcatgtacgtgggcgtcaagctgtcggccgtgcagggcggc
aagcagaacgtcatcctgtactacaccgagcccgactcccaggagtcctaccaggccgcc
agcttccccgtgccctcgctgagggacgcctggacccgcttctccatcgccgtccaagac
gagaaggtcaccttctaccttaactgcgacgtggagcctcaggtggtgcggttcgagaga
tccccggatgagatggagctggaagccggcgccgggctcttcgtcggccaagcgggagga
gcggaccccgataagtacatggggttgatcggggagctcagggtggtgggagacccccgc
gcagcagagagacactgcgaggaggacgaagacgactctgatgtggcctcaggggaagga
agcggcgacgaggggcggagagtgacgcccgagaaaggctcctggacgactgaccgcaga
ggggatcacgttgcaaccgacaccagaggagaccgcgttgcaacgaccccgccatcgtct
cgtccgatccagcagcctccggtcaccaacagacacgagctgtcggtggagagagagacg
gggcgactcgctgccaaaggggataagggcgcccaaggggacaggggagagaaaggggac
cggggccccatcgggccgaagggagaatcgggctccgggtccatctccaggggaggagct
cggggagagaagggagaaccaggagaaacgggcgtgaagggaagtgcaggatttggctac
ccagggaagaagggagaggccggcaccccgggccccccgggcccccctggccctccgggg
cccacagccgagctcctggagcgcagtgacggctcggtggtggagaggctggcggggccc
cgagggccgcctgggcctcaggggctgccaggcccccagggacaaccaggggctgatgga
gaagcaggcgatcccggtgaagatggaagtgcaggtgctgtcggacctccaggttttccg
ggaaccccaggagacgccggagttagaggagagaagggagaccgtggagatggccatccc
ggtccacggggccccccagggcctccgggacctccagggccagggtccagatcgacgttt
gtggacatggaaggctccgggttcccagacttggagtctgttcggggacagcctggagta
cccggccccccgggaccccctggccctcccgcccctgcggcccctgtggtagtgggcacg
gcaccggcctcaggggcctccggaccccctggaagagacggagcgaccggtcagcctggc
ctgcctggtctgccagggaccgacgggctcccaggaacactgggaccaaggggacaaaag
ggggattcaggggaacttggtcttccaggggcaataggagagaagggggcccccggggtg
ccgggctccgttggaccaccaggggaagggggactggccggcctgcccggacccatggga
ccggttggaccacctgggcgtccgggacctcctggacccagctaccgcgtgggctttgac
gacatggagggctcgggcggggccttctccaacggactccccggcgcccggggaccagag
ggaacacagggtgctcccggtatacccggactgcctgggaaggccggtctgccgggcgtc
gcgggtcagggcggcggcgagggaccccagggcagagacgggaggccgggcctggacggc
ttccctggaccgccgggaccaaagggcgacacaggagacagaggagaaactggtcaaccg
ggcagagatgggaacggactccctggaccaccaggtctacccggacccccgggacagatc
atctaccaaacgtccggcggctacgatggtgcggttggcagtgttgggcctcagggagga
ccaggttcacctggacaagccggattcccgggcccaataggaccaaagggcgaccgaggg
gacgcagggcagccggggtacggagcgaagggtgagaagggcgagccgggcctggtggtc
ggacccgatgggaacctgctgtacctgggggcgctgagcggactccagggagacagaggc
ccctctggacctgttggacctccaggtccgtacggccccccaggattgaagggtgaaatt
ggaatgccgggaagacctggtcgtccaggtgttaatggatataagggtgaacggggagat
ccagggaccggttctggctatgcatatccaggacccccagggcctcccggaccacccgga
cctcccggaccccccgttcccgtggaccgcttcaaccgctatgacacgtcgagaaactat
ccagctactaaaggagagaaaggcgaccagggagaccgcggggctccaggaattccagga
agtggttccacctttgacatttacgccttcaagaacgagctgaagggagagcgtggagac
gggggagtgaagggggagaagggagaaccgggtggcggcggatactatgacccccgtttt
gggggagttcaaggccctcaaggaccccctggaaacccaggcctgaccggtccaaaggga
gactccatcacaggccccccgggaccccagggaccttccgggacaccgggtatcggctac
gacgggcgccctggggccccaggttcacccggcccccctggacccccaggatccccctcc
ctaccgggggcctacaggccaaaccacgctatcaatgtcccggggcccccgggccctcca
ggccccccaggaacacccggacacacctccggggtgacggtgctgcgctcctacgacacc
atggtggccacggcgcggcgccaggcggagggaagcctcatctacgtcctggacaaggct
gacctgtacctgagggtccgcaacggcctgcgccaagtcatgctgggagagtacagtccc
ttctacagagatttggaaaatgaggtggcggaggtgcagcccccgcccgtggtcagctac
ccccagtcccaggaccagtccatcaacaacggggcggggcattactcgcaggggggcgcg
gccgtgggacccattgagcccccgccctaccagccccccgcggagccccccaggagggag
cccacccacccggtgcctcgatacccaccgcactacgaccccaggttcccggaccccagg
taccacggtcagaccgagggccgggtgaaccccccgcagcccgggaaccgctaccccgtc
acgccccagcgccggcccagcccccctgtgccgcagcccaccggccacgtgcacacgtcc
ggacccgggctccatctcatcgccctcaacgccccccagacgggcaacatgcaggggatc
cgcggggccgacttcctgtgcttccagcaggcccgggccgtgggcctgaagggaaccttc
cgggccttcctgtcctccaagctgcaggacctctacagcatcgtccgcaagtcggaccgg
gacagcctccccatcgtcaacctcaaggaccaggtgctgttcagcagctgggaatctgta
ttcagtgacgacaacagcaagatgagggacaacgcccccatatattccttcgacggcaga
gacattctcagggacagtgcgtggccggagaagttggtgtggcacggctcgaacgcccgc
ggccaccggcagacggacaactactgcgagacgtggcgggcgggagtgcgggcggtgacc
ggcctggcgtcggcgctggccagcggccacctgacgcagcacacgcccgccagctgctcc
agctcctacatcgtgctctgcatcgagaacagctacatcacacactccaaaaaataa
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