Zobellia galactanivorans: ZOBELLIA_40
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Entry
ZOBELLIA_40 CDS
T01586
Symbol
csdA
Name
(GenBank) RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
zga
Zobellia galactanivorans
Pathway
zga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZOBELLIA_40 (csdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zga03019
]
ZOBELLIA_40 (csdA)
03009 Ribosome biogenesis [BR:
zga03009
]
ZOBELLIA_40 (csdA)
Enzymes [BR:
zga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ZOBELLIA_40 (csdA)
Messenger RNA biogenesis [BR:
zga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ZOBELLIA_40 (csdA)
Ribosome biogenesis [BR:
zga03009
]
Prokaryotic type
rRNA helicases
ZOBELLIA_40 (csdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAZ94113
UniProt:
G0LCY1
LinkDB
All DBs
Position
39451..41241
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AA seq
596 aa
AA seq
DB search
MTKFEALGLSQPLLDAVKDMGFESPSEVQEKAIPILLESETDLVALAQTGTGKTAAFGFP
LIQKLDSNSRTTQGLILSPTRELCLQITNEIQAYSKFVKGLNTVAIYGGASITDQARQIK
RGAQIVVATPGRMKDMISRGLVDITKIDYCVLDEADEMLNMGFFEDIKDILSNTPKDKST
WLFSATMPREVATIAKKFMHSPIEITVGAKNAGTSNVQHEYYVVGGRDRYPALKRLADAN
PDIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSEMRKIHAIEKK
IQQDFISKKIPTGIEICEIQLYHLANKIKETKINKDVENYLPAINDVLEGIDRDELIKKI
VSVEFTRFSNYYNKTKDLNSSGSDDRGRERGERGERNTHAPSNGSVRYFINVGEKDGYDW
MSLKDFLRDTLNLGKEDVYKVDTKDSFSFFNTEAEHTEQILQFFTDFKLEGRFINVEVSK
NPGGSGGGRGRNDRGRKRDRDNDRGGRSRGRDRSSSKGKPSHSGKRRSSKSRSDFF
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagcattagggctaagtcagcccctattggacgctgtgaaggacatg
ggttttgaaagcccttccgaagtacaggaaaaagcaatcccaattttattggaaagcgaa
acggacctcgtggcgcttgcacaaacaggaaccggtaaaacggccgcctttggttttccg
ttaattcagaaactcgacagcaacagcagaactacccaagggttgatactctcccctacc
cgcgaactttgtttgcagattaccaacgagattcaggcttactccaagtttgtaaaaggt
ttgaacaccgttgcaatttatggtggggccagcatcaccgatcaggcccgacaaatcaaa
cgtggcgcacagatcgttgtggcaacgcccggtagaatgaaggacatgatcagccgtggc
ctagtcgatattacaaaaatcgactactgtgttctcgatgaggccgatgaaatgctcaac
atgggcttttttgaagacataaaggatattctttcgaatacccctaaagacaaatctact
tggttgttttcagctactatgcccagggaagtagctacaatcgccaaaaaattcatgcat
agccctattgaaattacggtaggagcaaaaaatgcaggaacctctaacgtacagcacgaa
tattacgtagttggcggaagagatagataccccgcccttaagcgacttgcagatgccaac
cccgatattttctcggtagttttctgtagaacgaaaagagacacacaacgcgttgccgaa
aagttaatcgaagacggatacaacgcaggagcattacatggcgatttaagccagaaccaa
cgagatttggtaatgaactccttccgtaaaaaacaaatacaaatgttggtcgctaccgat
gtagcggctcgtggtattgatgtcgatgacattacccatgttatcaactaccagcttccc
gatgaaatcgagacctatacccaccgtagtggccgtacaggtagagccggtaaatccggt
atttcaatggttatcgtaacccgaagtgaaatgcggaagatccacgccatagagaaaaag
atccaacaagattttatctctaagaaaattccaacgggtatagagatttgcgaaatacaa
ctttaccacttggccaacaaaataaaggaaaccaagataaacaaagacgtagagaattac
cttcccgccattaacgatgttcttgaaggaatagaccgtgacgagcttatcaaaaaaatc
gtatcggttgagtttacgcgtttctctaactattacaacaaaaccaaagacctcaattca
tccggttctgacgaccgcggaagggaaagaggcgaaagaggtgaaagaaatacgcacgcc
ccatctaatggttcggtacgttactttatcaatgtaggggaaaaagacggttacgactgg
atgtcattaaaagacttccttcgagacaccttgaatctaggtaaagaagacgtttacaaa
gttgatacgaaagactcgttttctttcttcaataccgaagcggaacacaccgaacagatc
cttcagttttttaccgacttcaaattagaaggcaggttcataaacgttgaagtatctaaa
aaccccggcggaagcggcggcggcagaggaagaaatgaccgaggcagaaaaagagatcgc
gataacgatcgaggtggcaggtctagaggtagggacagaagttcctctaaaggaaaaccc
agccattcgggaaaaagaagaagttcaaaaagcagaagcgacttcttttaa
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