Zobellia galactanivorans: ZOBELLIA_4123
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Entry
ZOBELLIA_4123 CDS
T01586
Symbol
uvrD
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
zga
Zobellia galactanivorans
Pathway
zga03420
Nucleotide excision repair
zga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ZOBELLIA_4123 (uvrD)
03430 Mismatch repair
ZOBELLIA_4123 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zga03400
]
ZOBELLIA_4123 (uvrD)
Enzymes [BR:
zga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ZOBELLIA_4123 (uvrD)
DNA repair and recombination proteins [BR:
zga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ZOBELLIA_4123 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
ZOBELLIA_4123 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
ResIII
AAA_11
ATG17_like
Motif
Other DBs
NCBI-ProteinID:
CAZ98258
UniProt:
G0L7S8
LinkDB
All DBs
Position
4837346..4839673
Genome browser
AA seq
775 aa
AA seq
DB search
MDNFIDELNDAQRAPVLHKDGPLMVIAGAGSGKTRVLTYRIAYLMQQGVDAFNILALTFT
NKAAREMKERIAKIAGRAETKNLWMGTFHSVFAKLLRYDGDKLGFPSNFTIYDTQDSQRL
LASIIKEMGLDKDIYKYKQVQNRISSYKNSLITVKAYMQNPELVEADAMAKRPRMGEIYQ
NYVERCFKAGAMDFDDLLLRTNELLNRFPEVLMKYQDRFRYILVDEYQDTNHSQYLIVKA
LADRYHNICVVGDDAQSIYSFRGANISNILNFQRDYENVGMYRLEQNYRSTRNIVNAANS
IIEKNKDQLEKVVWTSNDDGPPIKVHRSTTDAEEGRFVAGSIWDHKMNEQMGNGEFAVLY
RTNSQSRAIEDALRKRDIPYRIYGGLSFYQRKEIKDVLGYLRLVINPKDEEALKRVINFP
ARGIGQTTLDKLTVAANHYNRSIFEVIQNLDKIDLKINAGTKRKLQDFTTMIRSFQIMNE
TTDAFTLAEHVAKKSGLLLEFKKDGTPEGIGKMENIEELLNGIKDFVEGQKEIADATGSI
SEFLEDVALATDLDNDKGDDDRVALMTIHLAKGLEFPYVYIVGMEEDLFPSGMSMNTRSE
LEEERRLFYVALTRAEKQAYLTYTQNRYRWGKLIDAEPSRFLEEIDEKYIENLTPIDTGY
RYKPLLDGDIFGEVDKSRLRQNKPVKGTPPSRKKPNENQLRKLRKLKPDLATPVGNTNSV
DPNLAEGCLINHTRFGRGKVLKIEGVGNDRKAEIQFEKGDVKKLLLRFAKLEVIG
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
ttggataattttatagatgaactgaacgacgcccaaagggctcccgttctgcataaagat
ggccccttaatggtcattgccggagccggctcgggcaagacaagggtgcttacctatcgt
atagcctatttgatgcaacaaggtgttgatgcttttaacatattggcattgacctttacc
aacaaggccgcacgtgaaatgaaagagcgtatcgccaagattgcgggtagggcagagacc
aaaaacctttggatgggtacctttcactccgtttttgccaagttattgcggtacgatggc
gataaattgggcttcccgagtaatttcaccatatatgacacccaagattcgcaaaggctg
ttggcttccattatcaaggaaatgggactcgacaaggatatctataagtacaaacaggtg
cagaaccgtatatcctcatacaagaacagcctgattaccgtaaaggcctatatgcagaac
cctgaactggtagaagccgatgccatggccaaaaggccaagaatgggagaaatctaccag
aactacgtagagcgttgctttaaggccggtgcgatggactttgatgatttgttgttgcgc
accaacgagctattgaaccgcttccccgaagtgcttatgaagtaccaagaccggttccga
tatattttggtagatgagtaccaagataccaaccattcccaatatttgatcgtaaaggcc
ctagccgaccgctatcataatatttgtgtggtgggcgatgatgcacagagtatctattct
ttccgcggggcgaatatcagcaacatcctcaactttcaacgcgattatgaaaatgtgggc
atgtaccgccttgaacagaactataggtctacacgaaatatcgtaaatgcggccaactcc
attatcgaaaagaacaaagaccagttagagaaagtggtttggacctcgaacgatgacggc
cctccgatcaaggtacaccgcagtaccaccgatgccgaggaagggcgtttcgtagccgga
tccatttgggaccataagatgaacgaacagatgggcaatggcgaatttgccgtgctctac
cgcaccaactcacagtcccgcgccatagaagacgccttacgaaagcgcgatattccatat
cgtatctatgggggactatccttttaccaacggaaggaaatcaaggatgttttgggatac
ttgcgattggtaatcaacccgaaagacgaggaggcccttaaacgggtcatcaatttcccg
gcaaggggtataggacagaccacccttgataaacttacggtagcggccaatcattacaac
cgttccatttttgaggttattcagaatctcgataaaattgatttaaaaatcaacgcgggc
accaagcgaaagctacaagattttaccactatgatccgcagtttccagatcatgaacgaa
acgaccgacgcctttaccttggccgaacatgtggccaaaaaatccggactccttttagag
tttaaaaaagacggaacgccagaaggtatcggtaaaatggaaaatattgaagagttgctc
aacggtataaaggattttgtggaaggacagaaagaaattgccgatgctacaggaagtatt
agtgaattcttggaagatgtggccttggcaacggatttggataacgataaaggcgatgat
gaccgcgtggccctaatgaccattcacctggccaagggattggagtttccctatgtttat
atcgtaggtatggaggaagacctcttcccttcaggaatgagtatgaatacccgtagcgaa
ttggaagaagagcgaaggttgttctatgtggccctgacccgggccgaaaagcaagcctat
cttacctatacacaaaacaggtaccgatggggcaaactgatagatgccgaacccagtcgg
ttcttagaggaaatcgatgagaaatacatagaaaacctcactccgatcgataccggctat
cggtacaaacctttattggacggcgatattttcggagaggtggacaaaagcaggttacgt
cagaacaaaccggtgaaaggcaccccgccaagtcgaaaaaaaccgaatgaaaaccagctt
agaaaactgcggaaactcaaaccggacctggctacgcccgtgggcaacaccaattcggta
gaccccaatctggcagaaggctgccttatcaaccatacgcgatttggtcgaggaaaagta
ttgaaaatagaaggtgtgggcaatgaccgaaaggccgagatccaatttgaaaagggcgac
gtaaagaaattattgcttcgctttgccaaattggaagttataggttag
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