Zobellia galactanivorans: ZOBELLIA_643
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Entry
ZOBELLIA_643 CDS
T01586
Symbol
rpoC
Name
(GenBank) DNA-dependent RNA polymerase, beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
zga
Zobellia galactanivorans
Pathway
zga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ZOBELLIA_643 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zga03021
]
ZOBELLIA_643 (rpoC)
03400 DNA repair and recombination proteins [BR:
zga03400
]
ZOBELLIA_643 (rpoC)
Enzymes [BR:
zga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ZOBELLIA_643 (rpoC)
Transcription machinery [BR:
zga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ZOBELLIA_643 (rpoC)
DNA repair and recombination proteins [BR:
zga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ZOBELLIA_643 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CAZ94714
UniProt:
G0L9N3
LinkDB
All DBs
Position
complement(798189..802487)
Genome browser
AA seq
1432 aa
AA seq
DB search
MARIKDNNPIKRFDKISIGLASPEAILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYRGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKGPEGEEINKMDFLTEEEYLTILESIPVENQY
LEDTDPNKFIAKMGAECLIDLLARIDLKDLSYQLRHKANTETSKQRKTEALKRLQVVEAL
RESQENRENRPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKERKSTPEV
PIAGEGLTFYSAEEVEIAFNEGKVNLNAGIKVRAKDFNEEGELVYKIIPTTVGRVLFNME
VPEQAGYINDVLNKKSLRDIIGGILAVTDVPTTADFLDKIKTMGYEFAFKGGLSFSLGDI
IIPQEKHEMIADANGQVDGIMANYNMGLITNNERYNQVIDVWTSTNAMLTELAMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINIEDCETLRGIEVEALKKNE
EVVESLGERVLGRVSLHDVYNPLTEELILKAGQHILEADVKRIEESPIEKIEVRSALTCE
APKGICAKCYGRNLSTNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDNK
LTAKFNGIAEIEDLRTVTGEDGEGKSAEIVISRTSEIKIVDKKTGITLSTNNIPYGSQLF
IKNGASVSKDDVICSWDPYNGVIVSEFPGKIAYENIEQGITYQVEIDEQTGFQEKVISES
RNKKLIPTLLIQNNKGETLRSYNLPVGSHIMVDDGDKIKEGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKLGEVKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPEDILAIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIQDPGDTIFLENQLVHKDDFIKENDEIFGKKVVVEPGDSVNLKAGQIITAREL
RDENSVLKRSDKNLVTAKDAIAATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDTLEGLKENVIVGHKIPAGTGMRDYENIIVGSKEEYDEIMARKEALKF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggctagaataaaagataataatccaataaaaaggtttgataaaatttccataggattg
gcctcaccggaagcaattctggcggagtcgagaggagaggttctcaagcctgaaactatc
aactacagaacgcataagcctgagcgtgacggtcttttctgtgagcgtattttcggtcct
gtaaaggattacgaatgtgcctgtggaaagtataagagaatccgctaccgtggtatcgtt
tgtgaccgttgtggtgttgaagttaccgagaagaaagtacgtagggatagggtagggcat
atcaatttggtagtgcccgtggcccacatctggtacttccgctctttgcctaataaaata
ggttaccttttgggattgccatcgaagaagttggatatgatcatttactacgaacgttac
gtagtaattcaaccaggtatcgcaaaaggccctgaaggtgaagaaatcaataaaatggat
ttcttgaccgaagaggagtacttaacgattttggagtctattcctgtagagaatcaatat
ttagaagataccgaccctaacaagtttatcgctaaaatgggtgcggaatgtcttattgat
cttttggcccgtatcgacttaaaagatttgtcgtaccaattacgtcacaaagccaataca
gagacttccaaacaaagaaagaccgaggccctaaaaagacttcaagttgttgaagcgctt
cgtgaatctcaagaaaatagggaaaacagaccagagtggatgattatgaaggtgattccg
gtgatcccaccagaattacgtccattggtgccgctagatggtggtcgtttcgctacatcg
gatttgaacgatctttacagaagggtgattattcgtaacaaccgtttgaaaagattggta
gagatcaaggctcctgaagtgattcttagaaatgagaaacgtatgcttcaagaagcggta
gattctcttttcgataacacaagaaaagcgtctgcggtgaaaaccgaatcaaacagaccc
ttgaagtcactttccgactcattgaaaggtaagcaaggtcgtttccgtcaaaacctattg
ggtaaacgtgttgattattccgcacgttcggtaatcgtcgttggacctgaaatgaaattg
ttcgaatgtggtcttccaaaagatatggccgctgagctttacaaaccttttgtaatcaga
aaactgatagaaagaggtatcgttaaaacagtgaagtcggccaagaagattatagataaa
aaagagccggtagtttgggatatcctagagaatgtattgaaaggacatccggtactgttg
aaccgtgcccctacattgcaccgtttgggtatccaggccttccagccaaaacttattgaa
ggtaaggcgattcgtcttcacccattggtatgtacggcgtttaacgcggattttgatggt
gaccagatggcggttcaccttccattgggccctgaggctatccttgaagcccaattattg
atgttggcttcgcataacatcttgaacccggcaaatggttcgcctattaccgtgccttcc
caggatatggtattgggtctgtactatatgaccaaagagagaaaatctacacctgaagtt
ccgattgcgggagaaggtcttactttctattctgcggaagaagttgaaattgctttcaat
gaaggcaaggtaaacttgaacgcaggtatcaaggttagggcaaaagattttaatgaagaa
ggagaattggtgtacaagatcataccgactacagtgggtagggtgttgttcaacatggaa
gttccggaacaggcgggttatatcaacgacgtactgaacaagaaatccctaagggatatt
attggcgggattttggccgtgaccgatgtaccgactacagcagatttcttggataagatc
aagactatgggatatgagttcgcttttaaaggtggactatcatttagtttgggtgatatt
attatccctcaagagaaacatgaaatgattgctgacgcaaatggtcaggtagatggcatt
atggccaactataacatgggtcttattaccaataatgaacgttacaaccaggtaattgat
gtttggacatcgaccaacgccatgttgaccgagcttgctatgaagcgtattcgcgaagat
cagcaagggttcaactctgtgtatatgatgcttgattccggtgcaaggggttctaaggaa
cagattcgccagttgacaggtatgcgtggtttgatggccaagcctaagaaatctaccgca
ggtggtggtgaaattattgaaaacccgattttatcgaactttaaggagggactttcaatt
cttgaatactttatctcaactcacggtgcccgtaagggtcttgcggatacggcccttaaa
acggcggatgcaggttacttgacccgtcgtttggtggatgtttcgcaagatgttattatt
aacatcgaggattgtgaaaccctaagaggtattgaagtcgaggccttgaagaaaaacgaa
gaagttgtagaatctctaggggaacgcgttcttggtagggtttccttacacgatgtatac
aatccgttaacggaagaacttatcttgaaagcaggtcagcatattttagaggctgatgtg
aagagaatagaagagtcgcctattgaaaaaatagaagtacgttcggcattgacttgtgaa
gcgcctaagggtatttgtgccaaatgttacggtagaaacctttctaccaacaaaatggta
caacgcggtgaggccgttggtgttgttgcggcacaatcgatcggtgaacctggtacacag
cttactttgcgtactttccacgtggggggtattgcaggtaacatttccgaggataacaag
ttgacggctaaatttaatggtatagccgaaatagaagatttaagaacggttactggagaa
gacggtgaaggcaaatctgccgaaattgtaatctcaaggacttctgagatcaaaatcgtt
gacaagaaaacgggtataaccttaagtacgaacaacattccttacggatcgcaattgttc
atcaagaacggtgcctctgtatctaaagacgatgttatttgttcttgggatccttataac
ggtgttattgtttccgagttcccaggtaagattgcttacgagaatatcgagcaaggtatt
acctaccaagttgaaattgatgaacagaccggtttccaagaaaaggtgatttccgaatct
agaaacaaaaagttgattccaacacttttgattcaaaacaataagggtgaaaccttgcgt
tcttataaccttcctgttggttctcacatcatggtagatgatggagataagattaaagaa
ggtaagatccttgtgaaaataccacgtaaatctgctaaggcgggtgatattacgggtggt
cttccaagggtaacggaactgtttgaagcacgtaacccatctaacccggccgtagtgtct
gagatagacggtgttgtttccttcggtaagatcaaaagaggtaaccgtgaaattatcata
gaatctaaattgggcgaggtcaagaaatatttggtcaaactttcaaaccagattctggtt
caagagaacgattacgttcgtgcaggtatgcccctatcggatggttcgattacaccagag
gatattcttgcgatcaaagggccatctgccgttcagcagtacttggtaaacgaagtacag
gaagtatatcgtttacagggtgtgaagattaacgataagcacttcgaggttgttgtaaga
cagatgatgcgtaaggtacgtattcaagatccgggtgatactatattcttagagaaccaa
ttggttcacaaagatgacttcatcaaggaaaatgatgagattttcggtaagaaggtggtt
gttgagccaggtgattctgtaaaccttaaggcaggtcaaattattacggcccgtgaacta
agggatgagaattcggttttgaaacgttccgataagaacttggttacggccaaagacgcg
attgcggctacggctactccaatattgcaaggtattacaagggcttcgttacagacgaaa
tcgtttatatctgcagcatctttccaagaaacgaccaaagtattgaacgaagctgccgta
agcggtaaggtagatacattggaaggcttgaaagaaaacgttattgtaggtcataagata
cctgcaggtacgggtatgcgcgactatgagaacatcattgttggctctaaggaagagtac
gatgaaatcatggcccgcaaggaagccttgaaattttaa
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integrated database retrieval system
