Zobellia galactanivorans: ZOBELLIA_769
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Entry
ZOBELLIA_769 CDS
T01586
Symbol
rpoD1
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
zga
Zobellia galactanivorans
Pathway
zga02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
zga00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ZOBELLIA_769 (rpoD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zga03021
]
ZOBELLIA_769 (rpoD1)
Transcription machinery [BR:
zga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ZOBELLIA_769 (rpoD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
DUF7645
DUF6285
Motif
Other DBs
NCBI-ProteinID:
CAZ94835
UniProt:
G0L1Z6
LinkDB
All DBs
Position
933017..933880
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AA seq
287 aa
AA seq
DB search
MRQLKITKQVTNRETASLDKYLQEIGKVDLITADEEVELAQRIKAGDQVALEKLTKANLR
FVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNKIGSINKINKTFAFLEQAHERMPSAEEIAKELDMTVEDVKQSLKNSGRHV
SMDAPLIDGEDSNLYDVLRSGESPNPDKELLHESLRTEIERALETLTPREADVIRLYFGL
AGQHSMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgagacagcttaaaataacaaaacaggtcaccaacagggagaccgcatctttggacaag
tacttgcaagaaataggcaaagtagacttgattacagcagatgaagaagtagaattggca
caacgcatcaaggcaggcgatcaggtcgctcttgaaaaactcacaaaggccaatcttcga
ttcgttgtatcggttgccaagcagtaccaaaaccagggacttactttacccgatttgatc
aacgagggtaaccttggccttattaaggccgcacaacgctttgacgaaacgaggggattt
aaatttatttcctatgctgtatggtggattcgtcaatcgattttacaagctttggccgaa
caatcacgtattgtacgtttgccattgaacaaaattggttcgatcaacaaaatcaacaag
acctttgcttttcttgagcaagcacatgagcgtatgccatctgcggaagaaattgcaaaa
gagctggatatgacggtggaggatgtgaagcaatcacttaagaactcaggtcgtcacgta
tctatggacgctcctttgatcgacggtgaagattctaacctatacgatgtacttcgtagt
ggtgaatcgccaaaccccgacaaagaattgttgcacgaatctttgcgcaccgaaattgag
cgcgctttggaaaccttgacccctagggaagccgatgtcatccgtttgtacttcggtttg
gccggacagcactcaatgacactagaggaaattggcgaaacttttgacctgacaagggaa
agggttcgtcagattaaggaaaaagcgatcagaaggttgaaacacacttcaagaagtaag
atcctaaaaacctatttgggttaa
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