KEGG   Ziziphus jujuba (Chinese jujube): 107404398
Entry
107404398         CDS       T04794                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
zju  Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:zju00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:zju03009]
    107404398
Ribosome biogenesis [BR:zju03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    107404398
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_EML_2 Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_IP5PC_F Beta-prop_SCAP Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_VPS8 PEP5_VPS11_N VPS8_N Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_DCAF12 DUF2947
Other DBs
NCBI-GeneID: 107404398
NCBI-ProteinID: XP_048330479
LinkDB
Position
2:join(9085231..9085455,9086096..9086209,9086354..9086487,9086576..9086723,9086821..9087023,9087368..9087489,9087959..9088191,9088474..9088701)
AA seq 468 aa
MGDGGEALVACGDKSMATGISLWDLDTGDHLLHIPTSASPSHGLLCLKNQFLVASQIHRH
GSVGVGAIFIWPLNKPQAPLRSYTMEAIGPISCTRDGVYLAGGALSGNAYFWEVANGKLI
KTWRAHHKSLNCMLFSDDGSLLISGSDDGVICVWSLVSLLDVEDESGSSPSLLYCLSEHN
ASITCLLTTSGSSNSMLISSSMDGTCRVSDLVLGRVIQTNIYPVAIMAIVLHPSEKLLFC
GSQDGRIFMNKFDIGLVNNPLYVAEEDKVVLKGHKGSITALTFSQSGMISASEDGTIFIW
DVISGTIIRRFNHQKGPVTNLAVIPQASLFSVSSHRKAFNAFRVSLLDKYPQQSNSFNER
ITLLSSGCSPRENQNSIPFQSTDNSYQQIHDLEKSWTPAAMQMKVETSVEKRMWATKMAK
HVMEMNKHLQSRLLDLMQSRLLWSTEIDSSTPKKRKKLMAVESAPLQE
NT seq 1407 nt   +upstreamnt  +downstreamnt
atgggtgatgggggagaggctttggtagcgtgcggggacaaaagcatggcaacagggatc
agcctatgggatttggacacgggggatcatctacttcacatacccacctctgcttcacct
tctcatggtttgttgtgcttgaaaaaccagttcttagttgcttcacagattcacagacat
ggctctgttggtgttggggccatcttcatctggcccttgaacaagcctcaggcacctctt
aggagctacacaatggaggccattgggccaatttcttgtacaagggatggtgtatatctt
gcaggaggagctctatcaggaaatgcttatttttgggaggttgctaatggaaaattgatc
aaaacttggcgagcccatcataagtctttgaattgcatgctgttttcagatgatggttct
cttctaatttctggttcagatgatggtgtaatctgtgtttggtctttggtcagtttgcta
gatgtggaagatgaatctggaagctcaccttctttattatattgcttatcagagcacaat
gcatctataacttgtctcttaactacatcaggcagctcaaattccatgttaatatcaagc
tccatggatgggacatgcagggtctcagatttagtcttgggaagagtaatacaaactaat
atttatccagttgcaataatggcaattgttcttcatccatcagagaagctcttattctgt
ggaagccaagatggaagaattttcatgaacaaatttgatattgggctcgtcaataatcct
ctctacgttgcagaagaggataaagttgtgctaaaaggacacaaaggatcaataactgca
ttgacattcagtcaatcaggtatgatatctgcatctgaagacggcaccatcttcatctgg
gatgtcattagtggcacaattatcagaagattcaaccatcagaaaggccctgtaactaat
ttggcagtgattcctcaagcctcactgttttctgtgtcaagccatcgaaaagcctttaat
gcgttccgtgtttctttgcttgacaagtaccctcaacaatccaattcattcaacgaaagg
atcactcttctttcctcaggctgctcacctagagaaaaccaaaattctattccattccaa
agcactgataattcataccaacaaatacatgacttggagaaatcatggacaccggcagca
atgcaaatgaaagtggaaacaagtgtagagaaacgaatgtgggcaacaaaaatggcaaag
catgtgatggagatgaataagcatttgcaatcacgtttgctagatttgatgcagagccga
ttattatggtcgactgaaattgactcatcaacacccaaaaagaggaagaagctcatggct
gttgagagtgccccacttcaggaatag

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