Ziziphus jujuba (Chinese jujube): 107404978
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Entry
107404978 CDS
T04794
Name
(RefSeq) oligouridylate-binding protein 1 isoform X2
KO
K13201
nucleolysin TIA-1/TIAR
Organism
zju
Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107404978
03041 Spliceosome [BR:
zju03041
]
107404978
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
107404978
Spliceosome [BR:
zju03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
107404978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_5
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
107404978
NCBI-ProteinID:
XP_015867476
UniProt:
A0A6P3YZU6
LinkDB
All DBs
Position
7:join(1778915..1778995,1779898..1779959,1780337..1780439,1780679..1780755,1780873..1780934,1781113..1781200,1781370..1781445,1781544..1781574,1782045..1782164,1782676..1782761,1783060..1783233,1783548..1783820)
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AA seq
410 aa
AA seq
DB search
MQQQRLKQQAIMQQSLYHHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEP
LLQEVFSSTGPLEGCKLIRKEKSSYGFVDYFDRRSAALAIVTLNGRHLFGQPIKVNWAYT
SSQREDTSGHHNIFVGDLSPEVTDATLYACFSVYTSCSDARVMWDQKTGRSRGFGFVSFR
SQQEAQTAINDLNGKWLGSRQIRCNWAAKGSVNNDDKQGSDSKSVVELTNGTSEDGQEKN
NEDAPENNAQYTTVYVGNLAPEVTSVDLHRHFHALGAGTIEDVRVQRDKGFGFVRYSTHA
EAALAIQMGNARLLCGKAIKCSWGSKPTPPGTNSNPLPPPSVVHMPGFAAATYERQMALS
KMGGAQALMHPHGHHALKAAMGMGAAGASQALYDGGYQNIATTQQLMYYQ
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaacagaggttaaaacagcaggcgatcatgcagcaatcgctgtaccaccatcct
ggtctcttggctgcccctcagatagagcccatcttgagtggaaatctgcctcctgggttt
gattcaagtacatgccgcagtgtgtatgttgggaacattcacccacaggtcactgaaccc
cttcttcaggaggttttttctagtactggtccccttgaaggatgtaagctcattaggaaa
gaaaagtcctcttatggttttgtggactactttgatcgaagatcagctgctcttgctatt
gtgactcttaatggcaggcatttatttgggcagcctattaaagttaattgggcatataca
agcagtcaaagagaggatacatcaggtcaccataatatttttgttggcgatctgagtccc
gaggttactgatgctacgttgtatgcgtgcttttccgtttatactagttgttcagatgca
agggttatgtgggatcagaaaactgggcgctcaaggggttttggttttgtttctttccga
agtcagcaggaggcccaaactgcaataaatgacttaaatggcaagtggcttggaagcaga
cagattcgatgtaactgggctgcaaaaggttctgttaacaatgatgacaagcagggctca
gattctaaaagtgttgtggagctaacaaatgggacatctgaagatggtcaggagaaaaat
aatgaagatgctcctgagaacaatgctcagtataccaccgtttatgttggcaatcttgct
cctgaggttacctcagttgacctccatcgtcatttccatgcccttggtgccggcactatt
gaagatgttcgggtgcaacgagataagggttttgggtttgtgagatacagtacgcatgca
gaagcagctcttgccatccagatgggaaatgctcgacttctttgtggtaaagcgatcaag
tgttcatggggtagcaaacctacaccacctgggacaaactccaaccctcttcccccacca
agtgttgtacatatgccaggttttgcggctgccacctatgaacgacagatggcattgagc
aaaatggggggagcacaagccctgatgcatccacatggacaccatgctttgaaggcagcc
atgggaatgggtgctgctggagctagtcaggctttatatgacggcggctatcagaatatt
gcaaccacccagcagcttatgtactatcagtaa
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