KEGG   Ziziphus jujuba (Chinese jujube): 107405386
Entry
107405386         CDS       T04794                                 
Name
(RefSeq) replication factor C subunit 2 isoform X2
  KO
K10755  replication factor C subunit 2/4
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03030  DNA replication
zju03410  Base excision repair
zju03420  Nucleotide excision repair
zju03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107405386
   03410 Base excision repair
    107405386
   03420 Nucleotide excision repair
    107405386
   03430 Mismatch repair
    107405386
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zju03032]
    107405386
   03036 Chromosome and associated proteins [BR:zju03036]
    107405386
   03400 DNA repair and recombination proteins [BR:zju03400]
    107405386
DNA replication proteins [BR:zju03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    107405386
  DNA Replication Termination Factors
   ELG1-RFC complex
    107405386
Chromosome and associated proteins [BR:zju03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    107405386
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     107405386
  Check point factors
   HRAD17(Rad24)-RFC complex
    107405386
SSDB
Motif
Pfam: AAA Rep_fac_C DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 Rad17 AAA_22 RuvB_N Mg_chelatase AAA_assoc_2 AAA_14 SLFN-g3_helicase AAA_16 ResIII AAA_5 AAA_11 nSTAND3 nSTAND_NTPase5 AAA_24 AAA_2 PhoH AAA_30 AAA_19 DNAX_ATPase_lid AAA_28 AAA_7 DUF815 Parvo_NS1 ATPase_2 AAA_25 TIP49 RNA_helicase NB-ARC AAA_18 NPHP3_N TIP49_C AAA_17 bpMoxR
Other DBs
NCBI-GeneID: 107405386
NCBI-ProteinID: XP_048332300
UniProt: A0ABM3INN7
LinkDB
Position
5:complement(join(14171354..14171356,14172894..14172977,14173059..14173184,14173656..14173715,14173808..14173870,14173985..14174105,14175128..14175201,14175287..14175356,14175474..14175596,14176085..14176164,14176310..14176388,14176524..14176567))
AA seq 308 aa
MAPVLQTSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAAIAVGSAQHKGGYPCPPYKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSDEIMS
NRILHICNEEGLNLDEQALSTLSSISQGDLRRAITYLQSAARLFGSSISSEDLIGVSGVI
PQEVVEALFSACKGGNFDLANKEVNNIIAEGYPVAQMLSQLFEMIVEADDVSDEQKARIC
KKLAEADK
NT seq 927 nt   +upstreamnt  +downstreamnt
atggcgccagtactgcaaacctctcagccatgggtggagaaatatcggccgaagcaagtg
aaagatgtagcacaccaggaagaggttgttcgggtcctcaccaacaccctcgagaccact
aactgtcctcacatgctcttctatggtccgcctggtaccggcaaaaccactactgctctt
gccattgcccacgagctttttggacctgaattatacaagtctagagtgttggagcttaat
gcaagtgatgatcgtggtatcaatgttgttcggaccaaaataaaagattttgccgctatt
gctgtgggttctgctcaacataaagggggttacccatgtccaccatataagattattatt
cttgacgaggctgattcaatgacggaagatgctcagaatgcactgagacgtacgatggaa
acttactccaaagtcacaagattcttttttatatgtaattacatcagcaggatcatagag
ccacttgcttctaggtgtgcaaagttcaggtttaagccactttcagatgaaatcatgagc
aaccgcatattgcacatttgcaatgaagaaggcctcaatctggatgaacaggctctttca
actctgagctcaatttcacaaggtgatcttcgtcgggctattacatacttgcagtcagct
gctcgcttatttggatcttctatttcatcagaggacctgattggtgtttccggggtcatc
ccacaggaggttgttgaggcacttttttcggcttgcaaagggggcaactttgatttggca
aacaaggaagtcaataacataattgcagagggctatcctgtcgctcagatgctttcacag
ttatttgagatgattgttgaagcagatgacgtatcagatgaacagaaggctagaatttgc
aagaaattggctgaagcagataagtaa

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