KEGG   Ziziphus jujuba (Chinese jujube): 107407162
Entry
107407162         CDS       T04794                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107407162
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zju03041]
    107407162
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107407162
Spliceosome [BR:zju03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    107407162
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C WHD_HA2 AAA_22 DEAD AAA_19 AAA_30 nSTAND3 PWI T2SSE Cas3-like_C_2 AAA_16 SRP54 nSTAND_NTPase5 Flavi_DEAD ABC_tran
Other DBs
NCBI-GeneID: 107407162
NCBI-ProteinID: XP_015869881
UniProt: A0A6P3Z4D6
LinkDB
Position
2:complement(join(24586370..24586413,24586810..24586882,24586997..24587059,24587837..24587937,24588032..24588155,24588288..24588350,24588644..24589684,24590373..24590439,24590528..24590643,24590781..24590867,24591604..24591693,24591927..24591995,24592918..24592986,24593108..24593165,24593359..24593413,24593516..24593583,24593778..24593860,24596144..24596207,24597143..24597214,24597412..24597471,24598376..24598430,24598633..24598666,24599198..24599284,24599639..24599710,24599835..24600044,24600199..24600329,24600442..24600541))
AA seq 1051 aa
MGSESHLRTWVSDMLMSLLGYSQSTVVQYVIGIAKQATSPSDVVSKLVEFGLPSSSETQA
FAEEIFSRVPRKAAGLNLYQKQEREAAMLVRKQKTYAILDADDEDDDDDGDAPNAKSSIE
TTYESRKVVSHKKRFRKKTEEQDEDDEVVARGEEERRVKRRTSSDEDNDAESDEELLRDQ
REREKLEQNLRERDAAKTRKLTEPNLSKKEEEEAIRRSKALEEDDTEVLRKVSRQEYLKK
REQKKLEEIRDDIEDEQYLFDGVKLTEAEYRELRYKKQIYELVKKRSEEAEDTAEQYRMP
EAYDQEGGVNQEKRFAVAIQRYRDSGAGDKMNPFAEQEAWEDHQIGKATLKFGSKNKKRS
DDYQFVFEDQIEFIKASVMDGDEFDSEQLMESSEKSKAQSELEKLQADRKTLPIYPYRDE
LLKAVEEHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARVSQE
MGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLANYSVVMVDEAHERTLS
TDVLFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIHYTKAPE
ADYIDAAIVTALQIHVTQAPGDILVFLTGQEEIETVEEILKHRIRGLGTKIAELIICPIY
ANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGMES
LLVTPISKASAMQRAGRSGRTGPGKCFRLYTAYNYQCDLDDNTVPEIQRTNLANVVLMLK
SLGIHDLLHFDFMDPPPSEALLKALELLFALNALNKLGELTIMGRRMAEFPLDPMLSKMI
VASDKYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNS
WKETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELSSNENDLEAIKKTITSGF
FHHSARLQKNGAYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPD
WLVEIAPHYYQLKDVEDPGSKKFPTGQGRAL
NT seq 3156 nt   +upstreamnt  +downstreamnt
atgggtagcgagagccatctgagaacatgggtgtctgatatgttaatgtcactgttggga
tattctcagtccactgtcgttcagtacgttattgggatagctaagcaagcaacatcacca
tctgatgtggtgagcaagcttgtggagtttgggttaccatcatctagtgaaacacaagca
tttgctgaagaaatcttctcaagggtaccacgtaaagcggctggtttgaatctttatcaa
aaacaagagagagaagccgctatgttggtgagaaagcagaagacttatgccatattggat
gcagatgacgaggatgatgatgatgatggtgacgctccaaatgctaaatcttccattgag
actacttatgagagtaggaaagtggtatcccataagaagcgatttaggaagaagactgag
gaacaagatgaagatgatgaggtggttgcacggggagaagaagagagacgggttaaaaga
cgaacttcttcagatgaggataatgatgcagagtcagacgaagaattattacgcgatcaa
agagaaagagagaaattagaacaaaatttaagagaacgtgatgcagcaaagacacggaag
ttaacagagccaaatttatcgaagaaggaggaagaggaggctattcggagatcaaaagct
ttggaggaagatgacactgaagttttgagaaaagtgtcgagacaagaatatctaaagaag
agggagcaaaagaaactggaggaaataagagatgatatagaagatgagcaatatttattt
gatggtgtgaagcttactgaagcggaatatcgtgaattaaggtacaagaaacaaatatac
gagcttgtgaagaaacgctcagaggaagcggaggatacggcagagcagtataggatgcca
gaggcatatgatcaggaaggtggtgttaatcaggagaagagatttgctgtggccattcaa
cgttacagggactcgggtgctggggataaaatgaacccattcgcagaacaggaagcatgg
gaggatcatcaaattggtaaggcaacattaaaatttggttccaaaaataagaagcgatca
gatgactatcagtttgtgtttgaggatcagattgagtttatcaaggcatcagtaatggat
ggagatgagtttgatagcgagcaacttatggagtccagtgagaagtctaaggcacaatca
gaattggagaagcttcaggctgacaggaaaactttaccaatatatccatatcgggatgag
ctgctcaaagctgttgaggaacatcaggttcttgtcattgttggtgaaactggttcagga
aaaaccacacagataccccaatatcttcatgaagctggatacacaaagcgtggaaaggtt
ggatgtacacagccaaggcgagttgctgctatgagtgttgctgccagagtttctcaagaa
atgggtgtcaaacttgggcatgaggttggttattccattcgttttgaagattgcacatct
gacaagactgttctgaaatatatgacagatggaatgctgttgcgagaattccttggtgaa
ccagatctggcgaattatagtgtggtgatggtggatgaggctcatgaaagaacactctca
actgatgtcctctttggtttggtaaaggatattgcaagatttcgtcctgacctgaagttg
cttatatcaagtgcaacacttgatgcagagaagttttccgattattttgattctgctcca
attttcaaaattccaggtaggcggtttcctgttgaaatacattacaccaaagcaccagaa
gctgattatatagatgctgccattgttactgcccttcaaatccatgtgacacaagcacct
ggggatatattggtattccttactggtcaagaagaaattgaaacagtagaagaaattttg
aagcatagaataaggggcctaggaacgaagattgctgaattaataatctgccccatatat
gccaacctacccaccgagttgcaagcaaaaatatttgaaccaacacctgaaggtgcaagg
aaggtggtccttgccacaaatatagctgaaacgtcattgactatagatggaattaaatat
gtcattgacccaggctttgtaaagatgaagtcttacaatcctagaactggaatggagtcg
ctgttggtaacgcctatatccaaggcatctgcaatgcaaagggcaggtcgatctggtcga
acaggcccggggaagtgttttcgattatacacggcctacaattatcagtgtgatttggat
gacaatactgtgcctgagatacaacggactaaccttgcaaatgtggttcttatgcttaag
agccttggtattcatgacttgttacattttgatttcatggatccaccaccttctgaagca
ttattaaaagcattggaattgctcttcgcattgaatgccttaaataaacttggtgagttg
actataatgggtagacgaatggcagaatttcctcttgatcccatgctatctaaaatgata
gttgcttctgacaagtacaagtgttcagatgagatcatttcgattgctgccatgctttct
gtgggtaattcaatcttttaccgaccaaaggataagcaagtccatgctgataatgcccga
atgaattttcacactggcaatgttggagaccatatcgcattgcttaaggtttacaattca
tggaaagagacaaattactcgacacaatggtgttatgagaattatattcaggttaggagt
atgaaacgtgctagagatattagagatcaacttgaggggctattagagagggttgagatt
gagctatcctcaaatgaaaatgatttagaagctataaagaagaccattacatctggtttc
ttccatcattctgcaaggcttcaaaagaatggagcttatcgaacagttaaacatccacaa
actgttcatatacatcccagctcagggcttgcacaggttcttcctaggtgggttgtgtat
catgaattggtgcttacaaccaaggaatacatgagacaggtaacagaactaaagccagac
tggttggtcgaaatagccccacactattaccagctgaaggatgttgaagaccctggttca
aagaaatttcctactggacaagggcgtgcattgtaa

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