KEGG   Ziziphus jujuba (Chinese jujube): 107407342
Entry
107407342         CDS       T04794                                 
Name
(RefSeq) DNA topoisomerase 3-alpha
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03440  Homologous recombination
zju03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    107407342
   03460 Fanconi anemia pathway
    107407342
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zju03032]
    107407342
   03400 DNA repair and recombination proteins [BR:zju03400]
    107407342
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     107407342
DNA replication proteins [BR:zju03032]
 Eukaryotic type
  DNA Topoisomerases
   107407342
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     107407342
   FA (Fanconi anemia) pathway
     107407342
SSDB
Motif
Pfam: Topoisom_bac Toprim Zn_ribbon_GRF Zn_ribbon_Top1 Zn_ribbon_GRF_2
Other DBs
NCBI-GeneID: 107407342
NCBI-ProteinID: XP_048335697
LinkDB
Position
7:join(27187147..27187443,27187568..27187746,27187941..27188013,27188153..27188275,27188371..27188492,27188584..27188656,27188734..27188850,27189504..27189587,27190785..27190964,27191102..27191230,27193266..27193340,27194488..27194577,27194716..27194820,27195791..27195825,27197081..27197210,27197865..27197917,27198277..27198376,27199353..27199391,27200220..27200298,27201722..27201793,27202564..27202635,27203183..27203434,27204741..27204861,27205760..27206000)
AA seq 946 aa
MSGGGRSIRVLNVAEKPSVAKSVATILSGNQGLRIREGRSRYNKIFEFNYSINGQPSLML
LTSVTGHLMEVEFEDRFRKWHSCDPADLFHAPVRKFVPQDKTDIKRTLEEEARKCQWLVL
WLDCDREGENIAFEVIQVCTAVNRHLTIKRARFSALIDREIHAAAQNLVQPNKGFADAVD
ARQEIDLRIGASFTRFQTMLLRDAFVIDAATDDRNLVLSYGPCQFPTLGFIVERYWEVQS
YVPEEFWTINCSYKSDEGFASFSWMRGHLFDYTCAVVVYEMCVQEPNATVTKVKKQEKLK
YPPYPLNTVELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSERTNLHAIVL
EQQGHPVWGPYAQRLLDPGSGLWRNPGNGGHDDKAHPPIHPTKFSAGEAGWSQDHLRLYE
LVVRHFLACVSQPAVGAETTVEIDIAGELFAASGREIIAKNYLDVYRFESWGGSLIPTYV
VGQQFVPTTLTLDSGVTRPPPLLSEADLLTCMDKEGIGTDATMHDHIKKLLDRFYATKDA
NTRFSPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKAVSEGAKRKAEVLETCLQQMKA
CFLDARLNKVKLFEAMAIFFERSNRSIGDEQHTSGEVVRPCGLCLESDMVLRKNRDGNFM
VGCLGFPQCRNVVWLPGSVSEAVVTTNVCNSCNPGPVRKIQFTFRRLEIPLDYNSIHLGC
IGGCDETLRELIEICGTGSRTSARGRATPVVSGSVQRSNMRQGACIYCHQTGHSSSGCPS
QFSGPQSARSRGMNGQNNNTQSVCIYCHQLGHSSINCPSQSSATQSGELSIPCNSCGAPC
PLRTANTANNRGRKFYSCQLKECNFFVWEDSLNSGTGGRSIRANNTISSSNSSRNSGGGG
TRRVARAAPNAASVTFVSATGDPVSGRRCFVCGDPAHFANVCPNRG
NT seq 2841 nt   +upstreamnt  +downstreamnt
atgtcgggtggtggccggagcatcagagttctgaacgtggcggagaaaccgtcggtggcg
aagtcggtggccaccattctatctgggaatcaaggcctccgaatcagggaaggtcggtct
cgctacaacaagatcttcgagttcaattactccatcaacggccaaccttctctcatgctc
ctcacctctgtcaccggccaccttatggaggtcgaattcgaagaccgcttccgcaaatgg
cactcctgcgaccctgccgatctcttccacgctcctgtccgcaagttcgtcccccaggac
aagactgatataaagagaacgttagaggaggaagctaggaagtgtcagtggcttgtgctg
tggcttgattgtgatagagaaggagagaatattgcatttgaagttatacaagtttgtacc
gctgttaatcggcatcttactattaagagagctcgtttctctgcattgattgatagggaa
atccatgctgctgcacagaacctggttcagccgaataaggggtttgctgatgcagtagat
gctagacaagaaatagatcttcggattggtgcttctttcaccaggtttcaaactatgttg
ttgagagatgcatttgttattgatgctgctacagatgacagaaatctagttctaagttat
ggtccttgtcagttccctacacttggctttattgtcgaacgttactgggaagtacagtca
tatgtgccggaagaattttggacaatcaactgttcatataaatcagatgaaggatttgct
tcattcagttggatgcgtggccatttgtttgattacacatgtgctgttgtagtctatgag
atgtgtgttcaggaacccaatgcaacagtcacaaaggttaaaaagcaggagaaactgaag
tatcctccctatcccctgaatactgttgaacttgaaaagcgggcttcacgatacttccgg
atgagctctgaacacaccatgaaagtggcagaagatctttatcaagctgggttcatcagt
tatcctcgcacggagactgacagcttttctgagaggactaatttgcatgcaattgttttg
gaacaacaagggcatccagtctggggaccatatgcacagagattattggaccctggttct
ggactttggagaaaccctggtaatggtggacatgatgacaaggcccatccacccattcat
ccgacaaaattctctgctggagaagcaggatggagtcaagatcaccttagattgtatgag
ttggttgttcgccatttcttggcatgtgtctcacagccagctgttggggctgaaactact
gttgaaattgatattgctggtgaattgtttgctgcatcagggagggaaataatagcgaaa
aattacttagatgtttatcgttttgaatcatggggaggttcattgataccaacatatgtc
gttggacaacagtttgttccaactacactgactcttgattcaggagtcactaggcctcca
ccacttttaagtgaagcggatttgctgacttgtatggacaaggagggcattgggacggat
gcaactatgcatgatcacataaaaaagctgcttgaccgattttatgcaactaaagatgca
aacactcgtttctcaccaaccaatcttggtgaggcactggttatgggatatgatgacatg
ggatacaaactatggaaaccatacctcagagctgtaatggaaagggacatgaaagcagtt
agtgaaggtgcaaagaggaaagctgaagttttagaaacttgcttgcagcagatgaaagcg
tgtttcttggatgcaaggttgaacaaagttaaactcttcgaagccatggcaattttcttt
gaaagatctaatagatccattggagatgagcaacatacatctggagaagttgttcggcct
tgtggactttgcctggaatccgatatggtccttaggaaaaaccgggatggcaatttcatg
gttggatgcctgggatttccacagtgtaggaatgttgtatggcttcctggatctgtatca
gaagcagttgtaacaaccaatgtttgcaactcttgtaatccaggtcctgtccgtaagatt
caatttacatttcgccggctggaaataccattagattacaattctatccatttgggttgc
atcggtggctgtgatgagactcttagagagttaattgaaatttgtggaactggttcgcgc
acatcagcaagagggagagcaacacctgtggtgtctggtagtgttcaacggagcaacatg
aggcagggtgcttgcatatactgccatcaaacagggcattcttcaagtggttgcccttcc
cagttttcgggccctcaaagtgcaaggtctcgtggaatgaatggacaaaacaataacaca
cagagtgtttgcatatactgccatcaattagggcattcttcaattaattgcccttcccag
tcttcagccacccaaagtggagaattatcaattccatgtaattcttgtggagcgccctgt
cctttgcgaactgctaacacagcaaataacagaggaagaaagttctactcatgtcagtta
aaggagtgcaacttctttgtatgggaggatagccttaacagtggcactggaggtagaagc
attcgtgcaaacaacactatctcatcatctaattccagcaggaatagtggtggtggtggc
actcgcagagttgcccgggctgcaccaaatgctgcttctgtaacttttgtgtcagcaacc
ggtgatccagtatctggtagaaggtgcttcgtttgtggtgacccagcgcacttcgcgaat
gtttgcccgaaccgtggttag

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