Ziziphus jujuba (Chinese jujube): 107408801
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Entry
107408801 CDS
T04794
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03013
Nucleocytoplasmic transport
zju03015
mRNA surveillance pathway
zju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107408801
09122 Translation
03013 Nucleocytoplasmic transport
107408801
03015 mRNA surveillance pathway
107408801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107408801
03041 Spliceosome [BR:
zju03041
]
107408801
Enzymes [BR:
zju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107408801
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107408801
Spliceosome [BR:
zju03041
]
Complex C
Other components
EJC/TREX
107408801
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107408801
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
107408801
NCBI-ProteinID:
XP_048336500
UniProt:
A0ABM3IVZ0
LinkDB
All DBs
Position
1:complement(join(45959948..45959958,45960340..45960403,45960494..45960577,45960747..45960891,45961092..45961276,45961369..45961425,45961978..45962096,45962245..45962476,45962601..45962773,45963348..45963448,45963719..45963834))
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AA seq
428 aa
AA seq
DB search
MGEVRDNDAYEEELVDYEEEDQNAPNSLSAKPSGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEFERFRTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRVLA
LARDKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMKIYVDDEAKLTLHGLVQHYIKLSEGEKNRKLTDLLDALDFNQVVIFVKSVS
RAAELNKLLADSNFPSICIHSGMSQEERLKRYKGFKEGHSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQSRFEVDIKALPDQI
DTSTYMQA
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtcagggacaacgatgcatatgaagaagagctcgttgactacgaggaggaa
gaccaaaatgcccccaactctctctccgccaagccttctggcgaatccgtaaaaaagggc
tatgttggcatacacagttcgggattcagagacttccttttgaaaccggagcttcttcga
gccattgtagactcgggatttgaacatccttcagaagtgcaacacgagtgcatccctcaa
gctattttaggaatggatgtcatatgtcaagctaaatctgggatggggaaaactgctgtc
tttgttctgtcaactcttcagcagatagaaccaattgctggtcaggttgctgctttagtt
ctttgccacacaagagagttggcttaccagatttgtcatgaatttgagagatttcgcact
tatttgcccgacctgaaggttgcagtattctatggtggtgtcaacatcaaggttcacaag
gatttgctgaaaaatgaatgtccacatattgttgttgggactcctgggagagtgttggct
cttgcaagagataaagaacttggattaaagaatgtgagacattttattcttgatgaatgc
gacaaaatgcttgaatcactggatatgaggagagatgtccaagagattttcaagatgact
cctcatgataagcaagtgatgatgttttcagcaacactcagcaaagagatccgccctgtt
tgcaagaaatttatgcaggatcctatgaaaatttacgtagatgatgaggccaagttgact
cttcatggtcttgtacagcactacattaaattaagtgaaggagagaaaaaccgcaaattg
actgatcttcttgatgcgttggatttcaaccaagttgttatctttgtgaaaagtgttagc
agagctgctgagttgaacaaactacttgctgatagcaacttcccctctatatgtatccat
tctggaatgtcacaggaagagaggttgaaacgttataagggcttcaaggaggggcattca
agaattcttgtagcaacagatttagttggaaggggcattgacattgaacgtgttaacatt
gttattaactatgacatgcccgattctgccgatacctacctgcacagggtgggcagagct
ggcaggtttgggaccaagggacttgcaattacatttgtgtcatcagcatctgactctgaa
gttcttaatcaggttcagtcaaggtttgaggtggatataaaggcgcttccagatcaaatt
gatacttcaacatatatgcaagcttga
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