Ziziphus jujuba (Chinese jujube): 107409151
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Entry
107409151 CDS
T04794
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03030
DNA replication
zju03420
Nucleotide excision repair
zju03430
Mismatch repair
zju03440
Homologous recombination
zju03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107409151
03420 Nucleotide excision repair
107409151
03430 Mismatch repair
107409151
03440 Homologous recombination
107409151
03460 Fanconi anemia pathway
107409151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zju03000
]
107409151
03032 DNA replication proteins [BR:
zju03032
]
107409151
03400 DNA repair and recombination proteins [BR:
zju03400
]
107409151
Transcription factors [BR:
zju03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107409151
DNA replication proteins [BR:
zju03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107409151
DNA repair and recombination proteins [BR:
zju03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107409151
MMR (mismatch excision repair)
107409151
DSBR (double strand breaks repair)
HR (homologous recombination)
107409151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
107409151
NCBI-ProteinID:
XP_015872076
UniProt:
A0A6P3ZAU3
LinkDB
All DBs
Position
7:complement(join(1353312..1354923,1355482..1355933))
Genome browser
AA seq
687 aa
AA seq
DB search
MWSAPISTSKSTISLPLSKPLRNCERERERIPNSTSIESHIYLNGITTISYATVCLGFVC
GAQIMPVHLTPNAISTITAGDVNSKPLVQVLDIKLIGNSQERYRFLLSDAVSTQHAMLAT
QLNDRVKTGRVKKGSVIQLIEYICSPVQNRKIIVVLSMETIMLDCDIIGNPKMFVESDST
AQRTVPNGSLQQSARVNNNHLRAQNTVSDQQNFPATVQPPYQPPPNYRSRGPILKNEAPA
RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV
VDRFYDVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCPDEDGSIPRQQF
SFRPISEIENADNNSILDVIGIVISVNPSVPILRKNGMETQRRILSLKDWSGKSVELTLW
GDFCNREGQRLQEMFDGGFCPVLAVKAGKINDFSGKSIGTISATQLFINPDFPEALSLRE
WFDSGGKNTASFSISRDVIPGGQKNEIRKTVSQIKDEGLGRSDKPDWVTVKATITFIKTD
TFCYTACPLTIGDRQCNKKVTRSPNRRWQCDRCNQEFVECDYRYLLQAQIQDHTGLTWVT
AFQETGEEILGCSAKELYMLKYEEQDDARFGDIIRTRIFNQFLFRLKIKEEMYGDEQRVK
VTVVKADKVNYSSESRYTLDLISKFFR
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtggtccgcgccaatatcaacctccaaatctaccatttctctgcctctctctaaacct
ctgagaaactgtgagagagagagagagagaattcctaattcgacctcaattgaatctcat
atttacctcaacggcatcaccaccatctcctacgccaccgtttgcttagggtttgtgtgt
ggagctcagataatgccggtgcatctcacaccgaacgcgatctcgaccatcaccgccgga
gatgtgaactcgaagccgctcgtgcaggtcctcgatatcaagctcatcgggaactcgcag
gaaaggtaccggttcttgctctccgacgccgtctcaactcagcacgcgatgctcgctact
cagctcaacgaccgagtcaagaccggccgtgtcaagaaaggctccgtcattcagctcatc
gagtacatctgcagccctgtccaaaaccgcaagattattgtagtgctaagcatggaaact
attatgctggactgtgatataattgggaatccaaagatgtttgttgagtctgattcaaca
gctcagaggactgtacctaatggtagtttacaacagtcagccagagtaaacaataatcat
ttgagagctcaaaatactgtctccgatcagcagaatttcccagctactgttcaacctcct
taccaaccacctcctaattaccgaagtcgtggccctatcttgaagaacgaggcaccggca
aggattattcctatagctgcactgaatccttatcagggcaggtgggctatcaaggcaaga
gtaactgcgaaaggggatctccgtcggtataataatgctcgaggagatggcaaggtcttc
tcctttgacctccttgactctgatggaggagaaataagggtaacctgtttcaatgctgtt
gttgaccgtttttatgatgttattgaggttggtaaagtttacatgatttcaaagggaagt
ttaaaacctgctcagaagaacttcaaccatctgaagaatgaatgggagatatttctagag
gcaacttcaaccgttgatctttgccctgatgaagatggttctatacctagacagcagttt
tcctttagacctatcagcgaaattgaaaatgctgataataattcaattctcgatgttatt
ggtattgtgatatctgtgaacccttcagttcctatcttgagaaagaatggaatggaaact
cagagaagaattctgagtctgaaggattggtctggtaagagtgttgagttaaccctttgg
ggggatttctgcaacagggaaggtcagaggctgcaagagatgtttgatggtggattttgt
cccgttttagctgtcaaagctgggaagattaatgacttcagtgggaaatcaataggtaca
atttcggcaacacaactgtttataaatccagattttcctgaggctcttagcttgagggaa
tggtttgattctgggggcaagaatactgcttcgttctccatttccagagatgtaattccc
ggaggacaaaagaatgagatacgcaaaacagtttctcaaatcaaagatgaaggtcttgga
agatcagacaagccagactgggtcactgtaaaggcaactataaccttcatcaaaacagat
actttctgttacacagcttgcccattgacgattggagataggcagtgtaataaaaaggtg
acaaggtcaccaaatagaagatggcaatgtgacagatgcaatcaagaatttgtggagtgt
gattacagatatcttcttcaagcccaaattcaagaccatacaggattgacttgggtgaca
gcttttcaggaaaccggggaagagattttgggttgctcagcaaaggaattgtatatgttg
aagtatgaagagcaggatgatgccagatttggagacataattcgaactaggattttcaat
caatttcttttcaggctcaaaataaaagaggagatgtatggcgatgagcagagggtaaaa
gtcactgtggttaaggctgataaggtgaattattcttcagaaagcagatatactcttgat
ttgatttcaaagttctttaggtaa
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