KEGG   Ziziphus jujuba (Chinese jujube): 107409346
Entry
107409346         CDS       T04794                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03013  Nucleocytoplasmic transport
zju03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    107409346
   03015 mRNA surveillance pathway
    107409346
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107409346
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     107409346
    5.6.2.5  RNA 5'-3' helicase
     107409346
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     107409346
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107409346
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD UvrD-helicase Helicase_RecD NPHP3_N nSTAND3 ATPase PhoH AAA_16 SRP54 AAA_22 Ribosomal_S13_N AAA_32 AAA_25 AAA
Other DBs
NCBI-GeneID: 107409346
NCBI-ProteinID: XP_048319676
LinkDB
Position
6:join(15194200..15194766,15196767..15197018,15197099..15197269,15197401..15197451,15197648..15197740,15197895..15197990,15198113..15198163,15198244..15198362,15198815..15198923,15199042..15199164,15199245..15199316,15199976..15200047,15200148..15200214,15200591..15200733,15200812..15200883,15200975..15201103,15201863..15202018,15202135..15202248,15202354..15202452,15202570..15202647,15203129..15203263,15203613..15203687,15203786..15203903,15204057..15204430,15204540..15204602,15204695..15204766,15205076..15205207,15205293..15205412,15205516..15205647)
AA seq 1284 aa
MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADHT
DRGGGAGGGGAGGGAGGGGGPGSDNQSDASPVSVAPGSATKGRASGSGSSSVNNQMVDAL
AAGMSGLNFEDTGDDDNYDYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNT
SGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCRE
PCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKT
NPEASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTI
RWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVA
LELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEV
QMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQ
GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSE
KSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRF
RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL
LGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYV
QMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRN
GALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGI
VILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGG
PGVVPNDNYGSVSPSAQSAERRSNRGRGSYLPPGPPNGTHKPGVHPGGYPMPRVPITPFH
GGPPSQPYAIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSHLPHQQGSQQSIG
NLGSTFNFPALENPNSQPSVGGPLSQPGFVNNMPVQGPSQTFRDGFSMGGMSQDFLGDDF
KSQGSHVPYNVAEFSTQASQSGYGVDYVTQGAQGGFPGNFLNQNSQAGYSRFGTGNDFMS
QDYMAHGNQGLFTQVGFNDPSQDDATQSHYGVANANPLQSQGLMNSLYSQPFAHYNTQPL
NLQAPQQQPQHGHSSQNQKIHFNG
NT seq 3855 nt   +upstreamnt  +downstreamnt
atggattctcagcagaacaacttgttcgagacggcttcgcagcctgatacgggaaacgat
gcctatacgtttctcgaattcaatacccaaggcgaagacttcgattacccagagtttcgc
gacccgattcgttctcctgtagcctggcccacgccttctgattccttagctgaccacacg
gaccgcggtggtggtgccggtggcggtggtgctggtggtggtgcaggcggtggtggtggg
cctgggtctgataaccagtctgatgcttcgccggtttcggttgcacccggtagcgcaacg
aagggtcgggcaagcgggtcgggtagtagcagcgtgaataatcagatggtggatgcttta
gcggcgggaatgagtgggttgaacttcgaggacacgggggatgatgataattatgattat
ggtaaaggggatttcacggagcatgcgtgtagatattgtggggtttctaacccggcctgc
gtggttcggtgtaatgtgccttcgtgccgcaagtggttctgtaattctcgtgggaacacg
tccggttcgcatattgtgaatcacctggttcgagcaaaacacaaggaagtttgtcttcac
aaagacagtcccttgggagaaacaatacttgaatgttacaactgtggatgtcgaaatgtg
ttccttcttggatttatatcggccaagacagagagtgttgttgttcttctgtgtagggaa
ccttgcttaagtgttaatgcattgaaggatatgaactgggacctgagccagtggtgtccc
ctgattgatgataggtgtttcttgcagtggcttgttaaggttccctcagaacaggagcaa
ttgagagcacgccaaatcagtgctcaacaaataaataaggttgaagaactttggaagaca
aacccagaagcttcacttgaagatcttgagaaacctggagtggatgatgaacctcaacct
gtagccttgaagtatgaagatgcataccagtatcaaaacgtttttgctccacttattaag
cttgaagctgactatgataaaatgatgaaagaatctcaaagtaaggacaatgtcacaatt
cgatgggatatcggtcttaataagaagcgagttgcttactttgttttcccaaaggaggac
aatgaattgcgtcttgtgcctggagatgagttgcgactgcgatattctggtgatgctgct
cacccagcatggcagtcagtagggcatgtgatcaagttgactgcacaggaggaggttgcg
cttgaacttcgtgcaagtcagggagttccagttgatgttaaccatggctttagtgtggac
tttgtttggaagagtacaagctttgaccgcatgcagggagcaatgaagacttttgcagtg
gatgagacaagtgttagtgggtatatctaccatcacttgttaggccatgaagtagaggtt
cagatggttcgaaatacgttgcctcgtcgttttggtgcacctggtcttccagagctcaat
gcctctcaagtttttgctgtaaagagtgtcttacagaagcctataagtttgattcaagga
ccccctggcacaggaaaaactgttacttctgcagcaattgtgtatcacatggccaaacaa
gggcagggacaggttttggtttgtgctcctagtaacgttgcagttgatcaactagctgaa
aagataagtgccactggtttaaaggtggttaggctttgtgcaaaatcaagggaagctgta
agttctcctgttgagcatttaacccttcactaccaggttcgccatctggacacatctgaa
aagagtgaacttcacaagttacagcaattgaaagatgaacaaggagaattgtccagcagt
gatgagaaaaaatacaaagcattgaagcgtgcaacagaaagggagatttctcagagcgct
gatgttatatgctgcacatgtgttggagctggagaccctcgattggcaaattttaggttt
cgtcaggtacttattgatgaatccactcaagcaacagaacctgaatgcctaataccctta
gttcttggtgcaaagcaggttgttcttgttggggaccactgtcagcttggtccagtaatc
atgtgcaagaaagcagctcgtgctgggttagcacagtctctttttgaacgccttgttcta
cttggtgtgaaaccaattagactgcaggttcaataccgtatgcatccatctctatcagaa
tttccttctaacagcttctacgaaggcacactgcaaaatggagtgaccatcaatgagagg
cagtcatctggcattgattttccttggccggttcccaatcgtcctatgttcttttatgtg
cagatggggcaagaggagataagtgccagtggaacatcttacctaaataggactgaggct
gctaatgttgaaaagattgtaacaactttcttaaggagtggtgtggtccctagtcagata
ggagttataacaccctatgagggacagagagcatatattgtaaactatatgtcaagaaat
ggtgctctcagacagcaactttacaaggaaattgaggttgcaagtgtggattcatttcaa
ggaagggaaaaggattatatcatcctgtcttgtgttaggagtaatgaacatcagggcatt
ggattccttaatgatcctcgcaggctcaatgttgctctaacacgtgctcgttatggtatt
gtcatcctaggaaaccctaaagttttaagcaaacagcctctgtggaatagcttattgaca
cactacaaggaacatgagtgcttggttgaagggcctctaaataacctgaagcagagtatg
gttcaatttcagaagcccaaaaagatatacaatgaccggcgtcttttctttgggggtggc
cctggagttgtgcctaatgataattatgggtctgtttccccatctgcccaaagtgcagaa
agaagaagcaatcgtggtagaggttcctacttaccacctggcccccccaatggtacccat
aagcctggggtgcatcctggtggatatccaatgcctcgagtgcccattacaccatttcat
ggcggtcccccttctcagccatatgctattccaactcgtggagctgtacatggaccagtt
ggagctgtgcctcatgtccctcagcctggaagtcgtggttttggagctgggcgtggcaat
gctggtgctcctattggcagtcatctcccacatcaacaagggtcacagcaatctattgga
aatcttgggtcaacttttaattttcctgctctagaaaatccaaatagccagccatctgtg
ggtggtccactatctcaaccaggatttgtgaataatatgccagttcaagggccaagccaa
acatttcgtgatggattttccatgggaggcatgtctcaggacttcttgggtgatgacttc
aaaagtcagggatcacatgttccttataatgttgcggagttctccactcaggcttctcaa
agtggatatggtgttgattatgttacacaaggagcacaaggtggctttccagggaacttt
ttgaaccagaattctcaagctggatattctcggtttggtactgggaatgacttcatgtca
caggattacatggctcatggaaaccagggtctatttactcaggttgggtttaatgaccca
tcacaggatgacgcaacacagagccactatggcgtggccaatgcaaatccactccagtct
cagggtttgatgaattcactatactcccagccatttgcccattacaacacacagccactg
aacttgcaggccccacaacaacagccacagcatggccacagctctcaaaaccagaaaatc
cacttcaatggttag

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