Ziziphus jujuba (Chinese jujube): 107409776
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Entry
107409776 CDS
T04794
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zju03041
]
107409776
Enzymes [BR:
zju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107409776
Spliceosome [BR:
zju03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107409776
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
IstB_IS21
Med28
Motif
Other DBs
NCBI-GeneID:
107409776
NCBI-ProteinID:
XP_048317939
LinkDB
All DBs
Position
12:join(8319255..8319755,8319896..8320071,8320243..8320356,8320543..8320645,8320730..8320816,8320978..8321096,8321232..8321406,8321536..8323791)
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AA seq
1176 aa
AA seq
DB search
MNNTFSTASHSSTTTRFSFPSSLFKRFPYPHQFPFTQTLAFSFPKSLRTSSPNRFRISFK
QPPASDFSAEPQLSDAEEDYDYDDDDDDVAADEYDDISGELSEEPDQSDQEIEIPMVEDE
DESSTPTEESKWQRVEKLRNEVKEFGDEVIDVNELASIYDFRIDKFQRLAIQAFLRGSSM
VVSAPTSSGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFREFRQTFGDSYVGLLTGD
SAVNKDAQVLIMTTEILRNMLYQSVGTSGDGLFHVDVIVLDEVHYLSDISRGTVWEEIVI
YCPKKVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDK
SGSHMNRKLSLNYLQLNASGIKSYKDDGRRRNSRKRVNGMSFDGVGDMSGQSLSKNDINM
IRRSQVPQITDTLWHLKARDMLPAIWFIFSRKGCDAAVQYLEDCKLLDECEMGEVELALK
RFRIQYPDAVRETAVKGLRQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGIN
MPARTSVIASLTKRSDSGRVQLSANELLQMAGRAGRRGTDERGHVVLVQTPYEGAEECCK
VLFAGLEPLVSQFKASYGMVLNLLAGAKVTRSSNESEDMKANQTGRTLEEARKLVEQSFG
NYVSSSVMAAAKEELTKIKKEIEMLTSEVSDDAIDKKSRKLLSEAAYKEIADLQEELRAQ
KRLRTELRKRLESQKISSLKPLLEESENGRLPFLCLQYKDSDGVQHSVPAVYLGKVDSLS
GSKLEKMVSSDDSFALDVPREETSSSDSQMNLDFEPSYYVALGSDNSWYLFTEKWVKTVY
KTGFPNVALALGDVLPREIMRMLLDKSEMKWDKLADSEIGALWCMEGSLETWSWSLNVPV
VNSLSENDELLHTSEAYHGAVESYKDQRNKVSRLKKKISRTEGFREYKKIIDMAKFTVEK
IKRLKARSRRLINRIEQIEPSGWKEFLQISNVIHETRALDINTHVIFPLGETAAAIRGEN
ELWLAMVLRNKVLLDLKPAQLAAVLASLVSEGIKVRPWKNNSYMYEPSTTVINVINFLDG
QRSFLLEFQEKHGVNISCYLDSQFSGMVEAWASGLTWREMMMDCAMDEGDLARLLRRTID
ILAQVPKLPDIDPILQRNAKAASDVMDRPPISELAG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaccttctctacagcctcacactcttccaccactacgcgcttctcattcccc
tcttctttattcaaacggtttccttatccccaccagttccctttcactcaaaccctagct
ttctctttccccaaatcgcttcgcacatcctccccaaatcgatttcgaatctccttcaag
caacccccggcttcagacttctctgcagaacctcaactttccgatgccgaagaagactac
gactacgacgacgacgatgacgatgtcgccgctgatgaatacgacgacatttcaggtgaa
ttatcggaggaacccgaccaaagcgaccaggaaattgaaattccgatggtggaagatgag
gatgaatcatcaactccaaccgaggaatccaagtggcagagagttgagaaacttagaaat
gaagttaaagagtttggcgatgaagttatcgatgtcaatgagctcgcgtctatatacgat
ttccggatagataaatttcagcgattggccatacaagcattcctgagaggttcatcgatg
gtggtttcggcaccaacgagcagtggcaagactttgatagcagaagctgcggctgttgct
acagtagcaaggggaagaagattgttctatacaactcctctcaaggcattatccaaccag
aagtttcgcgaatttcgccagacattcggtgacagttatgttggtctgcttactggagat
tctgctgttaacaaagatgctcaggttttgatcatgacaacggagattttgcgcaacatg
ttataccagagtgtgggaacatctggtgatggactttttcatgttgatgtgattgttttg
gatgaagttcattatttaagtgatatatctcgcggtacagtgtgggaagagatagttatt
tattgcccaaaaaaagttcaactcatatgtctgtcagcaacagttgcaaatccagatgag
ctggctggttggatcggtcagattcatggtaaaactgagttggtaacgtcatcgaagcga
ccggtaccattgacttggcatttttctacaaagacttctttgttacctcttcttgataag
tctggatcacacatgaataggaagttgtcactcaattatctacaacttaatgcttcagga
ataaaatcttacaaagatgacggtagaaggagaaattcaagaaaacgtgtgaatgggatg
agttttgatggtgttggtgacatgtctggacaatcactttcaaagaatgatatcaacatg
atacgccgttcacaagttcctcaaattactgatacattatggcaccttaaggcaagggat
atgctgccagcaatttggtttatttttagcaggaaaggatgtgatgcggctgttcagtac
cttgaagattgcaagctcttagatgagtgtgagatgggtgaggttgaactagccttgaag
agattccgcattcagtatcctgatgctgtcagggagactgctgtgaaaggtctacgacaa
ggggttgctgcacatcatgctggctgtttacctttgtggaaatcatttatagaagagctg
tttcagcgaggacttgttaaggttgtctttgctacagaaacacttgctgctggaattaat
atgcctgctaggacatctgttattgcatctctcaccaaaaggagtgatagtggacgcgtt
cagttaagcgcaaacgaactgcttcagatggctggtcgtgctggacgtagaggcactgat
gaaaggggtcatgtagtgcttgttcaaactccttatgaaggtgctgaagaatgctgtaag
gttctatttgctggacttgaacctcttgtttcgcagtttaaggcttcatatggaatggtg
ctgaatcttctcgctggagcgaaagttactcgcagttcaaatgaatcagaagacatgaag
gccaaccagacagggagaactttggaagaggctagaaaattagttgagcaaagttttgga
aactatgttagcagcagtgttatggctgctgcaaaagaggagctaactaaaatcaagaaa
gagattgagatgctgacttccgaagttagtgatgatgccatagataaaaagagcaggaag
cttttgtcagaggcagcatacaaggagattgcagatctgcaggaagaattaagggcacag
aaacgcctgcggactgaactgagaaaaaggttggaatcccagaaaatatcttcactgaaa
cctttactagaggagtctgaaaatggacggttaccctttttgtgtttgcaatataaagat
tctgacggagttcaacactctgtccctgctgtttatttggggaaggttgactcactaagt
ggttcaaaacttgaaaaaatggtatctagtgatgactctttcgccttagatgtaccaaga
gaagagacaagttctagtgactctcaaatgaacttagactttgagccatcgtattatgtg
gctctgggctcagataattcttggtatctgtttacagaaaagtgggttaaaactgtttat
aagactggctttcccaatgttgctttagctctgggggatgttttgcctcgggagattatg
aggatgcttcttgataagtcggaaatgaagtgggacaagcttgctgattctgaaattggt
gcattatggtgcatggaaggatctcttgaaacatggtcttggagtttgaatgtgccagtt
gtgaatagcctttccgaaaatgatgagcttttacatacatcagaagcataccatggtgcc
gtagaaagttacaaagaccaaagaaataaagtctcacgtttgaagaagaagatatcacga
actgagggctttagagaatataaaaagatcattgacatggccaagtttaccgtggaaaaa
attaaacgcttgaaagctagatcgaggcgattgattaatagaatagagcaaattgaacca
tctggttggaaggagttcttgcagatcagcaatgtcatacacgagactagggcattggat
attaatacccatgtcatatttccactaggtgaaactgcagctgcaatccgtggagaaaat
gaactctggcttgcaatggttctccgaaacaaagtcttattagatttgaagcctgcacaa
cttgctgctgtcttggcaagtttggtctctgaagggattaaagttcgtccgtggaaaaat
aacagctatatgtatgaaccttctacgacagtaatcaatgtgatcaacttcttggatgga
caaagaagctttctactagaattccaagaaaaacatggagtaaacatctcttgctatttg
gatagccaattttcaggaatggtcgaagcttgggcttctggtctcacttggagggaaatg
atgatggattgtgcaatggacgaaggtgatctagctcgtcttctacgacgaacaatcgat
atattggctcaggttcctaaattgcctgatattgaccctattctacaaagaaatgccaag
gctgcttctgatgtcatggatcgtccaccaataagcgaactggctggatga
DBGET
integrated database retrieval system
