KEGG   Ziziphus jujuba (Chinese jujube): 107410474
Entry
107410474         CDS       T04794                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
  KO
K13117  ATP-dependent RNA helicase DDX35 [EC:5.6.2.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:zju00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zju03041]
    107410474
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107410474
Spliceosome [BR:zju03041]
 Complex C
  Other components
   Complex C specific factors
    107410474
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C AAA_22 DEAD HA2_N AAA_19 AAA_30 SRP54 AAA_7 ResIII nSTAND3 Cas3-like_C_2 AAA_11 AAA_29 AAA_23
Other DBs
NCBI-GeneID: 107410474
NCBI-ProteinID: XP_048331112
LinkDB
Position
1:join(4348514..4348617,4348697..4348841,4349024..4349098,4349971..4350060,4350293..4350372,4350466..4350535,4350660..4350745,4351249..4351318,4351474..4351569,4351749..4351854,4351971..4352017,4352239..4352322,4352416..4352469,4352996..4353096,4354176..4354266,4354803..4354967,4355149..4355238,4355468..4355539,4355784..4355882,4356044..4356130,4356658..4356711,4356873..4356952,4357624..4357771)
AA seq 697 aa
MSQFWKPGTEKPRLLDDEEGGVLFFAPSFSSSSSRFGYSSIEKQRQRLPVYKYRTAILYL
VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV
KLGEEVGYTIRFEDVTNTGVTMVKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTD
ILLGLLKKIQRRRPELRLIISSATIEAKSMSQFFQNSKKHRGIEGEVVGPITEPAILSVE
GRGFSVQIHYVEEPVSNYIQSAVSTVLLIHDQERMGDILVFLTGQDDIDAAVKLLSEEVQ
NRGRNSSGLIVLPLYSGLPRAEQDLVFTPTARGKRKVVISTNIAETSLTLEGVVYVVDSG
FSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFNNEMSAEGIP
EIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMVRALEVLYSLGVLDDDAKLTSPTG
FQVAEIPLDPMISKMILSSSHLGCTEEIITIAAVLSIQSIWASGWGAQKELDEAKLRFAA
AEGDHVTFLNVYKGFLQSSKLSQWCHKNYVNYHAMKKVIEIREQLRRTAQRLGIVLKSCE
TDMLVVRKAITAGFFANACRLEAFSHNGKYKTIRGSQEVHIHPSSVLFRVNPKWVIYYSL
VSTDRQYMRNVISIEPSWLREAAPHFYHQQRPNPMLH
NT seq 2094 nt   +upstreamnt  +downstreamnt
atgtcgcagttttggaaaccagggacagaaaagcctcgccttcttgacgacgaggagggt
ggggttcttttcttcgccccttctttctcttcctcatcatctagatttgggtactcgagt
atagagaaacagaggcagaggcttcctgtttacaagtaccgaaccgccatcctctatttg
gttgaaacccacgccactaccattattgttggcgaaacgggtagcggcaaaaccacccag
attccacagtacctcaaggaagcaggttgggctgatggtggacgtgtaatagcatgcaca
caaccaagacggctggccgtccaggcagttgcttcaagggtagcagaggaaatgggggtc
aagcttggagaggaagttggctacacaatacgatttgaagatgttacaaatacaggcgta
actatggtgaagttcctcacagatggtgtgttactcagagaaatgatggatgatcctctt
ttaactaagtatagtgttataatggttgatgaagctcatgaaaggtccatatcgactgat
attttactgggtctcctaaaaaagatccaacgacgtcgacctgagttacgcctcattatc
tcctctgccacaattgaagcgaaatctatgtctcagttctttcagaacagcaaaaagcat
cgaggaatagaaggtgaggttgttggaccaataacggagcctgcaatcctatcagttgag
ggtagagggttcagtgtacaaattcattatgttgaggagcctgtatcgaactatatacag
tctgctgtttcaacagtactgctcattcatgatcaggaacgaatgggagatattctggta
tttcttactggtcaagatgatattgatgctgctgttaagttgttaagtgaagaagtacaa
aaccgtggaaggaactcctcaggattgatagttttgcctctctactcgggactcccccgt
gctgagcaggatcttgtatttactcccactgctagagggaagaggaaagtagtgatatca
acaaatatagcagagacatcattaacattggagggcgttgtctatgttgttgacagtggg
ttctcaaagcagcgtttctacaaccctatatcggatattgaaaatctggtggtggcacca
atatctaaggcttctgctaggcaaagagctggtagggctggaagagttcggccaggcaaa
tgttacaggctatatacagaagagtatttcaataatgaaatgtctgctgagggaattcca
gagattcaaagatctaatctcgtttcatgtgtgattcagttaaaagccttaggaatagat
aatatcttgggctttgactggccagcatctccatctcctgaagcgatggttcgagcactt
gaagttctttattcacttggagtgctggatgatgatgctaaacttacttcaccaactggg
tttcaagttgcagagattccattggacccaatgatctcaaaaatgattttgtcttcaagt
catcttggttgcacagaggagataattaccattgctgctgttctctccattcaatctatc
tgggcatctggttggggagcacaaaaggagctggatgaggccaagttgagatttgctgct
gctgagggtgatcatgtgaccttcctgaatgtgtacaaaggatttcttcagtctagtaaa
ttgtcacagtggtgccataaaaactatgtaaactaccacgccatgaaaaaagttattgaa
atcagagaacaactcagaagaacagcacagagattaggcatcgtcttaaaatcatgtgaa
acagatatgctggttgttagaaaagcaattactgctgggtttttcgcaaatgcatgtcgt
ttagaagctttcagtcacaatgggaagtacaagactattagaggttcacaagaagttcat
attcacccatcatctgttttattcagagttaatcccaagtgggtaatatactattcactt
gtctcaactgataggcaatacatgcgcaatgtcatttccatagaaccttcctggctgagg
gaggctgctccgcatttttaccatcaacaacgcccgaatccaatgcttcactag

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