KEGG   Ziziphus jujuba (Chinese jujube): 107410679
Entry
107410679         CDS       T04794                                 
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03030  DNA replication
zju03410  Base excision repair
zju03420  Nucleotide excision repair
zju03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107410679
   03410 Base excision repair
    107410679
   03420 Nucleotide excision repair
    107410679
   03430 Mismatch repair
    107410679
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zju03032]
    107410679
   03400 DNA repair and recombination proteins [BR:zju03400]
    107410679
DNA replication proteins [BR:zju03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    107410679
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     107410679
SSDB
Motif
Pfam: RFC1 BRCT AAA AAA_lid_RFC1 RCF1-5-like_lid AAA_22 PTCB-BRCT AAA_19 AAA_30 Rad17 AAA_5 nSTAND3 BRCT_2 AAA_assoc_2 RuvB_N Sigma54_activ_2 TsaE AAA_18 AAA_14 DNAX_ATPase_lid Zeta_toxin AAA_16 AAA_24 NTPase_1
Other DBs
NCBI-GeneID: 107410679
NCBI-ProteinID: XP_048324213
UniProt: A0ABM3IA66
LinkDB
Position
10:join(5752823..5752825,5752961..5753113,5753775..5754356,5754447..5754514,5754888..5754963,5755043..5755104,5755192..5755337,5756281..5756447,5756616..5756804,5756918..5757039,5757145..5757352,5757882..5757935,5758433..5758602,5758794..5758884,5759559..5759740,5759883..5759922,5760911..5761035,5761746..5761818,5761928..5762020,5762101..5762344,5762757..5762813,5762961..5763103)
AA seq 1015 aa
MSQSDIRKWFMKSHDKGKGNGSTDSKPAKPAQPPVTRVAEKTSQAKSQPEKPVQASQENS
GRRKTSKYFSKDKPKEEEPVEVPSKRKNQKDLDKSDKPLPGKKIRIAESDSDDDFILPNS
KSSDDATPKKKLKSGSGRGIVQKRLAVDESDGDDVEDKEASLKSTGRGRGGRGGSGRGVV
KKPLNVDESDEDDVEDKEAPLKSTGRGRGGRGASAAAPAGGRGRGAGRGGFMNFGERKDP
PNKGQKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCD
EDIGGRKSSKAKELGTTFLTEDGLFDMIRASNHAKTPALESKKSMDSADVSLTKKSPQKV
ETKKILSDSSLTKNVAKKGLTSGASPAKQRGKSTQYSALTWTEKYRPKVPNDLIGNQSLV
KQLHDWLVNWHKQFLDTGSKKTGKKANDSGAKKAVLLSGTPGIGKTTSAKLVCQMLGFQA
IEVNASDTRGKADAKIEKGIGGSNANSIKELVSNEALSIDMDRSKHPKSVLIMDEVDGMS
AGDRGGIADLISSIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQVAKRLMQV
ANAEGLQANEIALEELAERVNGDMRMALNQLQYMSLSMSVIKYDDVRQRLLTSGKDEDIS
PFTAVDKLFGFNAGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSIGKDDNGMKRLNL
IARAAESIGDGDIFNVQIRKYRQWQLSQSGSLASCIIPAALLHGQRETLEQGERNFNRFG
SWLGKNSSLGKNKRLLEDLHVHLLASREYNSERETLRVEYLTLLLKRLTEPLRVLPKDEA
VQEVVEFMNTYSISQEDFDTVVEISKFKGRPNPMDGVQSTVKAALTRAYKEGNKFRMVRA
ADFVTLPGIKKAPKKRIAAILEPYDDEIGENNDDQVAVSEDDSSNEEDLEGSAVGEKLQQ
ELQSLNSKGVQVQVDLKGSGNSNGKKTPASRGKNNSSASQKKGAGGSGSGTKRKR
NT seq 3048 nt   +upstreamnt  +downstreamnt
atgtcacagtcagatatccggaagtggtttatgaagtcgcatgacaaaggcaaaggcaat
ggcagcacggattctaagccagcgaaacctgcacaaccacctgtgacacgtgtagcggag
aaaacttctcaagctaagtctcagcctgaaaagccggtgcaagcaagccaagaaaattca
ggcagaaggaaaaccagcaagtatttttctaaagacaagcccaaagaagaagaaccagtg
gaggttccatccaaaagaaagaatcaaaaggatcttgataaatcagataaacccttgcct
ggcaaaaaaattcgcatagctgaaagtgatagtgacgatgatttcatcttgcctaattct
aagagctcagatgatgctactcccaaaaagaaattgaaaagtggatcaggcaggggaatt
gtacaaaaacgtctggctgttgatgaaagtgacggagacgatgtggaagataaggaagct
tctcttaagtcgaccggaagaggtcgtggtggaagaggtggatcaggcaggggagttgta
aagaaacctctgaacgttgatgaaagtgatgaagatgatgtagaagacaaggaagctcct
cttaagtctactggaagaggccgtggtggaagaggtgcctctgcagcagctccagctggc
ggaagaggcagaggtgctgggcggggtgggtttatgaattttggggaaaggaaagatcct
ccaaacaaaggacaaaaggaagttcctgaaggtgcttcagattgtttggctggtttgact
tttgtaattagtggtacgcttgacagtttggaaagggaagaagcggaagacttgattaag
cgccatggtggccgtgttactggatctgtcagcaagaaaacgaattatctcctatgtgat
gaagatattggggggaggaaatcctctaaagctaaagagcttggtacgacttttcttacg
gaggacggattgtttgatatgattcgtgcatcaaatcatgctaagacacctgctttagaa
tcaaagaaatcgatggatagtgctgatgtatctctcacaaagaagagtccgcagaaagta
gaaacaaagaagattctgagtgatagctccttgacaaaaaatgtagccaaaaaaggtttg
acctcaggtgcttccccagccaagcaaagaggtaaatctactcagtattctgcattgaca
tggacagaaaagtataggccaaaagttccaaatgaccttatcgggaatcagtcattggta
aagcagcttcatgattggttggtaaactggcataagcaatttcttgatactggaagtaag
aaaacgggtaaaaaagcaaatgactctggtgccaaaaaggctgtactgctgagtggaact
cctggaatagggaaaacaacatcggcaaagttggtctgtcagatgcttggtttccaggct
attgaggtaaatgctagtgacactcgggggaaagctgatgctaagatcgaaaaaggaatt
ggtggaagcaatgcaaattctataaaagagcttgtcagcaatgaggccctgagtattgat
atggatcggtcaaaacatccaaaatctgtacttattatggatgaagttgatgggatgtct
gctggagatagaggcggaattgctgatcttatttctagcatcaagatatctaaaattcct
atcatctgcatctgcaatgaccgctacagtcagaaattgaagagtcttgtgaactactgt
ttgcttctcagctttcggaagcctaccaaacaacaggtggcaaagaggttaatgcaagtt
gcaaatgctgaaggccttcaagccaatgagattgcgctggaggaactagcagaacgagtg
aatggagatatgcgtatggcactaaaccagttgcagtatatgagcctctcaatgtcagtc
ataaaatatgatgatgtgaggcagcgcctgcttaccagtggaaaggatgaagatatttca
ccctttacagccgttgataagctatttggttttaatgcagggaagttgagaatggatgag
cggattgatttaagcatgagtgatcctgatctagtccctcttcttattcaggaaaattat
attaactataggccaagttcaatcggtaaagatgacaatgggatgaaacgtttgaatttg
attgcccgagctgctgagtctattggcgatggggacattttcaatgtacagatacgaaaa
tatcggcaatggcaactttctcaaagtggttctctggcatcctgtattattcctgctgca
ctgttgcatgggcaaagagagacacttgagcagggagaaagaaattttaacagatttggt
agctggctgggaaagaactcatcattagggaaaaataagaggcttttggaggatttgcat
gtccatcttcttgcttcacgtgaatataattcagagagagaaaccctgcgagttgaatac
cttacacttctcctgaaacgattgactgagccactacgggtcctgcctaaggatgaagcc
gtccaggaagttgttgagttcatgaatacatactccattagtcaggaggactttgacact
gttgtggaaatatccaagtttaaggggcgtccaaatcctatggatggtgtacaatctact
gttaaagcagcactgaccagagcatataaagaagggaacaaattccggatggtacgagct
gcagattttgttacacttcctggaattaagaaagcccccaagaagcggattgcagcaatt
ctagaaccatatgatgatgaaataggcgaaaacaatgatgaccaagtggcagtaagtgaa
gatgattcttcaaatgaagaggacttggaaggttcagctgttggtgagaagttgcaacaa
gaacttcaaagtttgaactcaaaaggggtgcaagtccaagtggatttgaagggttcagga
aattcaaatggcaagaaaacaccagctagtagaggaaaaaataattcaagtgcctcgcag
aaaaaaggcgcaggaggttcagggtccggtaccaagagaaagagataa

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