Ziziphus jujuba (Chinese jujube): 107410712
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Entry
107410712 CDS
T04794
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107410712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107410712
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107410712
mRNA cycle factors
Common to processing body (P body) and stress granule
107410712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
107410712
NCBI-ProteinID:
XP_024926804
UniProt:
A0A6P6FXT3
LinkDB
All DBs
Position
10:join(6438976..6439047,6439190..6439795,6439896..6440018,6440469..6440695,6440980..6442918)
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AA seq
988 aa
AA seq
DB search
MMIVQMDKMSAPSSRERAQRLYDKIIELENKRRRSVQARIPSDPNAWQQIRENYEAIILE
DHAFSEQHNIEYALWQLHYKRIEELRAHYSAALASAGANTSQGVKGPARPDRITKIRVQF
KTFLSEATGFYHDLIVKIRAKYGLPLGNFSEDAENRIVMEKDGRKSAEVKKGLISCHRCL
IYLGDLARYKGLYGEGDSKTREYAAASSYYLQAASLWPSSGNPHHQLAILASYSGDELVA
VYRYFRSLAVESPFSTARDNLIVAFEKNRQSFSQLPGDTNVSMIKESSARLTGKGRGKGE
LKPVNKDIDSSLVKERTYTIQETYKMFCVRFVRLNGILFTRTSLETFVEVLSSVSIGMCE
LLSSGAEEELNFGADAVENGLVLVRLISILIFTVQNVNRESEGQTYAEILQRTVLLQNAS
TAAFELMGHILERCVQLGDPSSSFLLPGILVFVEWLACCPDIAAGSDVDEKQTAVRSKFW
KSLVSFLNKLLSTGPTFLDGDEDDMCFNNMSRYEEGETENRLALWEDFELRGFLPLLPAQ
SILEFSRKHSFGSDSQKEKRARLKRIFAAGKALASLVRVDQKAIVFDSKGKKFGIGDEHQ
VSDNVVPAYSGMLSTDDMVLENHAVKVANLGVSQPDHQPYIEGEDDDEVIVFKPIVSDKR
PDVIDSNWAAYEGMLAGKNACSGGMKFNGGSVSAALDNLCDQAAFDGLPRPPVSVGNMFP
QHLQPVPAHGSKWSAEEATALANSLNGLRFMGNGHVKSDMQEDNSVALSVPIQQSSNVGT
GGMFYSHTKAEEAFIPSKVDVIASSGAVTKNLTAKSSSAMSPGLRRSPVSRPVRHLGPPP
GFNPPPGFGMVPAKQVNEPNSRSDFASENTIVDDYSWLDGYQVPPSMKGTGLINSLNYPS
QSNTHHVANSNGLSGTINFPFPGKQVPTMQFQGEAQKGWQDYPMFDHLKTNNEQQLQQQQ
QFLNGNQNFTPLPEQYQGQSAWTGRYFV
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagtgcagatggataaaatgtctgctccttcatcaagggagcgcgcccaacgt
ctgtatgataagatcattgagctggagaataagcgacgaaggtctgtacaggcccgtatt
ccatcagatcccaatgcgtggcagcagatacgtgagaattatgaggcaataattctcgag
gatcatgccttttctgagcagcacaatattgaatatgctttgtggcagttgcattacaag
cggattgaggaactgagagcacactacagtgctgctcttgcttctgctggagcaaacaca
tctcagggtgtgaagggccctgcacgtccagatcgaattacgaaaataagggtgcagttt
aaaaccttcctttcagaagcaacagggttttaccatgatttaattgtgaaaattagagcc
aagtatgggcttccactgggtaatttctctgaggatgcagagaatcgaattgtcatggag
aaagatgggagaaaatctgctgaagtgaagaaaggtttgatatcttgccatcgttgtttg
atatacttgggtgaccttgcacgttataaaggattatatggggagggtgactccaaaact
cgtgagtatgctgcagcttcaagttactacttgcaggctgcatctctatggccatcaagt
ggaaatcctcatcatcagcttgctatattagcttcctattcgggggatgagctggtagct
gtttatcgatattttcgtagtctggcagtggagagtcccttctcaactgcaagggacaat
ttgattgtcgcctttgaaaagaatcgtcagagtttttctcaactgcctggggatactaat
gtttctatgatcaaggagtcatctgcccggctgactggcaaaggaaggggcaagggagaa
ttaaagcctgttaataaggatattgattctagccttgtcaaggaaagaacatataccatt
caggagacatataaaatgttttgtgttcgatttgttcgtctaaatggcattcttttcacc
cgcacaagcctcgaaacgtttgtagaagttctgtcttcagttagcattggtatgtgtgaa
ctactgtcttctggagcagaagaggagctgaattttggtgcagatgctgttgagaatggt
cttgtacttgtcaggcttatctccattcttatattcacagtacagaatgtgaatagggaa
tctgaaggtcagacatatgctgaaattttacaacgaactgttttacttcagaatgcatcc
actgcggcttttgagttgatggggcacatattagagagatgtgtgcagttgggtgatcct
tcttcaagtttcctgttacctggcattctagtttttgttgaatggttggcatgttgtcca
gatattgcagctggaagtgatgtggatgagaaacagactgctgttagatcaaaattttgg
aaatctcttgtatcctttttgaataagctattgtcaactgggccaacatttttagatggt
gatgaagatgatatgtgttttaataatatgagtaggtatgaagaaggggagactgagaac
cgattggcattgtgggaggattttgagttgcgaggattcttgccacttcttcctgcacaa
tccattttagaattttcaaggaagcactcatttggaagtgacagtcaaaaggaaaaaagg
gcccgtcttaaaaggatttttgcagcaggcaaggctctagcaagtttagtcagggttgat
cagaaagctatagttttcgattcaaagggaaagaaatttggtattggtgatgagcatcaa
gtatcggacaatgtcgtacctgcatattcaggaatgctcagcacagatgatatggtgcta
gaaaatcatgcagtgaaagtagcaaatttaggagtttcacagccagaccatcagccatat
atagaaggcgaagatgacgatgaagtaattgtttttaagccaattgtttctgacaagcga
cctgatgtgattgactcaaattgggcagcctatgagggcatgctggccggtaagaatgct
tgttctggtggcatgaaatttaatggtggttctgtttctgctgctcttgataatctttgt
gatcaagcagcttttgatggtcttccacgtccacctgtatctgttggaaatatgttcccg
cagcatttgcagccagttcctgctcatggttcaaaatggtcagcagaagaagcaactgct
ttagctaacagcttgaatgggttgaggttcatggggaatgggcatgtaaaatctgatatg
caggaagataattctgttgcactttcagttcccattcaacagtcttccaatgttggcact
ggtggtatgttttatagtcatactaaagcggaagaggcttttataccatccaaggttgat
gttattgcttcttctggagcagttactaagaatttgactgcaaagtcatcatcagccatg
tctccaggattaagaagaagtccagtaagtcgacctgttaggcaccttggcccaccacct
ggttttaaccctccacctggttttggcatggttcctgctaagcaagtaaatgaacctaat
tctcgttcagattttgcaagtgaaaatactatagtggatgattatagctggttggatgga
tatcaggtgcctccatcgatgaaaggcactgggcttattaattcccttaattacccatct
cagtcaaacactcatcacgttgctaacagcaatggcttgtctggaacaatcaactttccc
tttcctgggaaacaagttccaactatgcaatttcaaggggaagcacagaaaggatggcaa
gattacccgatgtttgatcatcttaaaacaaacaatgaacaacagctgcagcaacagcaa
caattccttaatggaaatcagaactttactccactgcccgagcaatatcaaggacagtct
gcctggacaggtcgttactttgtgtga
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integrated database retrieval system
