Ziziphus jujuba (Chinese jujube): 107411380
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Entry
107411380 CDS
T04794
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107411380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107411380
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107411380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
107411380
NCBI-ProteinID:
XP_048325137
UniProt:
A0ABM3IBP8
LinkDB
All DBs
Position
10:complement(join(15434334..15434423,15434768..15434917,15435676..15435764,15436726..15436846,15436952..15437054,15437298..15437376,15437780..15437921))
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AA seq
257 aa
AA seq
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MAGKAGATPTTYSPSPSTLKTKSLIFKANDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS
AYAEFGNTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRGQGSDHKEFSSMLH
KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSVSC
LGRNLVIDPILEEESCQDGSLMITSMPSRYEVTQLTVTGEWSTPKINEGVQLCLDACSKL
AKIMRSCLKEAATALEE
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atggccggaaaagctggagcaactccgaccacgtactctccgtctccgtcaaccctgaaa
accaaatcacttattttcaaagccaacgacgtcgattgggtccgacccgatggacgcggc
ttccaccagtgtagacctgcctttttcaggactggtgctgtaaatgctgcttcaggatct
gcttatgcagagtttggaaataccaaggtcattgtgtctgtatttgggccaagagagagc
aagaaggcaatgatgtatagtgatgtaggacgcttgaattgtaatgttagctatacaact
tttgccaccccagttcgtggacagggatcagaccacaaagagttttcttccatgcttcat
aaatctttggagggtgccatcatattggaaagtttccccaaaacaactgtggatgtcttt
gcattggtcttggaatcagggggcagtgatcttcctgttgtgatatcatgcgccagtctt
gccctagcagatgcagggataatgatgtatgaccttgttgcttcagtatccgtgtcttgt
cttggaaggaacctagttattgatccaattttggaagaggaaagctgtcaagatggaagc
ttaatgataacctcaatgccttctcgttatgaggtcactcagctaactgttacaggggaa
tggtcaaccccaaaaattaatgagggagtgcagctatgcctagatgcttgctcgaagctt
gcgaagatcatgaggtcatgtttgaaggaagctgctactgctttggaagaatag
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