KEGG   Ziziphus jujuba (Chinese jujube): 107411926
Entry
107411926         CDS       T04794                                 
Name
(RefSeq) sm-like protein LSM4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107411926
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107411926
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107411926
   03041 Spliceosome [BR:zju03041]
    107411926
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107411926
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107411926
Spliceosome [BR:zju03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107411926
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 107411926
NCBI-ProteinID: XP_015875093
UniProt: A0A6P3ZAA2
LinkDB
Position
10:complement(join(21440852..21440874,21441245..21441409,21441937..21441976,21442651..21442728,21442852..21442950,21443288..21443419))
AA seq 178 aa
MVCEFYFCLLRSLVFETVRFYALLRWLSLQLPLSLLKTAQGHPMLVELKNGETYNGHLVN
CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRSDRKP
PGVGRGRGRVREEGPGGKQAKGVGHGVDDAGSRGLGGGRGRGLTRKTRINKGGGRGRG
NT seq 537 nt   +upstreamnt  +downstreamnt
atggtatgcgagttttatttttgccttctccgtagtttggttttcgaaactgttagattt
tatgctttacttcgttggctttcattgcagcttcctctttccctgcttaagaccgcgcaa
gggcatcctatgttggtggagctcaaaaatggggagacttacaatgggcatttggtaaat
tgtgatacttggatgaacatccaccttcgagaagtcatttgtacctcgaaagatggagat
cggttttggagaatgccagagtgttatattcgtggaaatactataaagtatcttagagtc
ccagatgaggttattgataaagttcaggaggagaccaagagccggtcagatagaaagcca
cctggtgtgggacgtggaagagggagagttagagaggaaggtcctggtgggaagcaagca
aaaggcgttggacatggtgtagatgatgcaggttccagaggcttgggtggaggccggggt
agagggttaacgcgcaagactcgtattaacaaaggtggaggtcgtggtcgtggctga

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