KEGG   Ziziphus jujuba (Chinese jujube): 107412907
Entry
107412907         CDS       T04794                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107412907
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107412907
Enzymes [BR:zju01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107412907
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     107412907
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 107412907
NCBI-ProteinID: XP_048326171
LinkDB
Position
8:join(5725912..5725989,5726169..5726295,5726413..5726528,5727270..5727323,5727675..5727842,5728261..5728419,5728521..5730410,5730591..5730766,5731630..5731699,5731815..5731936,5733138..5733298,5734186..5734460,5734837..5735010,5735130..5735270,5735373..5737093,5738040..5738154,5738722..5739006)
AA seq 1943 aa
MEETISSIPDGEIIGIKFGLATHKEICTASINEFPISHASQLSNPFLGLPLEFGKCESCG
TAEPGQCEGHFGYIELPIPIYHPSHVNELKKMLSLICLNCLKVKKNKIPTKSTGIAERLI
SSCCEVAPQVSIRDAKTRDGVCYLELKRQSRSTLQPGFWNFLDKYGFHYGNENRRTLLPC
EVMEILKRVSEDSRKKLVAKGFAPQDGYVMQYLPVPPNCLSVPEISDGVTVMSTDPSMTM
LKKVLKQIEIIKSSRSGSPNFEAHEVEANELQLAVDQYLQIRGTTKQTRDMDAQLGVSKE
ASNSTKAWLDKMRTLFIRKGSGFSSRSVITGDAYKGVSEIGIPCEIAHRITFEEKVSEHN
MTYLQELVDNKLCLTYKDGSSTYSLREGSKGHTVLRLGQVVHRRIMDGDLVFVNRPPTTH
KHSLQALRVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQL
LSSHNGILNLQLANDSLLSLKRLFNSYFMDKAAAQQLAMFASSSLPQPAFLKAYSSKHCW
TALQILQTALPALFDCSSERYLIKGSDILRLDLNRDIIPVVINDMATSIFFERGSEEVLK
FFNSLQPLLMEHMFSEGFSVSLEDFSMCLESIQQIQKGILDISPLLFHLKSTHNELLELQ
LESHIRVVKTPVINFVLESSALGDLIDSKSDSAINKVVQQIGFLGLQISDQGKFYTKTLV
EDVSSLYKNKYPFERIDYPSAEYGLVKSCFFHGLDPYEEMVHSISTREVIVRSSRGLTEP
GTLFKNLMAILRDVIICYDGTVRNVCSNSIIQFDYGLKTGTGPQNFYPPGEPVGMLAATA
MSNPAYKAVLDSTPSSTSSWQLMKEVLLSSASFKNDIVDRRVILYLNACDCPRKYCRENA
AYSVKNQLKKVSLKDTAVEFLIEYKQSVLRGYHSDAGLVGHLHLNEVLLKELNLTMQDIL
QKCQDTVNSHRKKKKDKVFKKAVLSICECCSFQQFSSNEGSEVPCLMLEWQDAESGIPLE
ETSRILADLICPVLLKTTIKGDPRICSANIIWINPNTTIWIRNGRKSSKGELAVDVVLEK
SAVKQSGDAWRVVLDSCLPVLHLIDTRRSVPYAIKQVQDLLGISCAFDQAVERLAKSVSM
VAKGVLKEHLILLANSMTCTGNLIGFNSGGYKALSRSLNVQVPFTDATLFTPKRCFERAA
EKCHMDTLDSIVATCSWGKHVAVGTGSRFDILWDTREVELNQGGVDVYDFLDLMTTADRE
ESTTACLGAEIDDLMLEDEIAEDENGELRLSPNWGSFSPTKDQEDTSKESGWETVVAWQN
KAKENTSQPNMWSGWERNEAQAQRAESSDWDNKATPEKFPARWSSNAEDWTETAHPSQEH
NEPRKAEDKMTKPNVWSSWGADETQTDRGERCDWGNKVIPKKAVAHWSSSNTDDWTENAH
PSPIEELAELPKGEDNISKPNVRSAWGRDETQTQGSEPCDWNTKVTPRKTVDGWSSSHDD
DWTGTAHTSQAVEHAEPPAANHSWGQQKSPKSVQSWGQKTSPEVSSDWKQQKSPESSQGW
GQKKSPKSAHSWRQQNSPEIFQDCEQQKPQESSQGWERQKSPEHSQGWGHQKSKESSKGW
EQQTSSPEHSQGWGHQKSEENSQSWEQQKSHEHSQGWGQPKSQESSQGWGQQKTLESSQG
RGRQKSPESSQGWTSQVESKPAASSHGWESPKAGYDSEKQKQWGQRSGEPYKNNRFEGSR
GRGSNAGEWKSRKSWPNKTHGMGSENFSGAAAGLFTATRQRIDIFTSEEQDALSTIEPIM
HSIRRIMHQSGYGDGDPLSDADQSYILDNVFNYHPDKATKTGSGIDHLTISRHSSFQDSR
CLYIVSTDGRKVDFSYRKCLENLIKTKYPDVAEAFMSKYFRKPRSGVNRERTPSLVQTPN
ENLFPEHTPNENPISEQTASENA
NT seq 5832 nt   +upstreamnt  +downstreamnt
atggaggaaaccatctcaagtattccggacggggaaattataggaatcaagtttggtctg
gcaactcataaggaaatttgtacagcgtctatcaatgaatttccaattagccatgccagt
cagctgtctaaccccttccttggtctgcctctcgaattcggaaaatgtgaatcttgtggt
accgctgaacctggacagtgtgaaggtcactttggatatattgaattgcctataccaata
tatcatccgagccacgttaatgagttgaagaaaatgttaagcttgatatgtttgaattgc
ttaaaagtgaaaaaaaataagattccaaccaagagcactggtatagcagaaagactaata
tcttcgtgttgtgaggtagctccacaagtttcaattcgagacgctaaaacacgagatggt
gtttgttacttggaattgaaacgtcaatctaggtctactttacaacctggtttctggaat
ttcttggacaagtatggttttcattatggtaacgaaaacaggcgcactttgctgccttgc
gaggtgatggaaattctaaagagagtctctgaggacagcagaaaaaaactggttgctaaa
ggttttgcccctcaagatggatatgtgatgcaatacttacctgttcctcctaactgtttg
tctgttcctgaaatttctgacggtgttactgtcatgtctacggatccctctatgaccatg
ctcaagaaagttctaaagcagattgaaatcatcaaaagttcaaggtctggttcaccaaac
tttgaagctcatgaagtggaggccaatgagctgcaattagctgttgaccagtaccttcaa
ataaggggtaccacaaagcaaactcgggatatggatgcacaactcggggtgagcaaagaa
gccagcaattcaacaaaagcatggcttgacaagatgagaactttgttcataagaaagggg
tcaggcttctcttctcgctctgtgattacgggggatgcatataaaggtgtcagtgaaatt
ggtatcccttgtgaaattgctcacaggattacatttgaggagaaggttagtgagcacaat
atgacatatcttcaagagttagttgataacaagctgtgcttaacttataaggatggttct
tcgacatactcactgcgagagggttcaaaagggcatactgttctaagattgggtcaagtg
gtacatcgaaggattatggatggagatcttgtttttgtcaatcggccaccaaccacccat
aaacattcactgcaagcacttcgagtctatgtccatgatgatcatacagtgaagataaac
cctcttatttgtggtcccttaagtgctgactttgacggtgattgtatccacttgttttat
ccccagtctctggcggcaaaggcagaagtcttggagcttttctcagtggagaaacaactt
ctgagctcgcataacggcatcctgaacttgcaattggctaatgactcgctgctgtcatta
aagagattgtttaactcatattttatggacaaggctgctgctcagcaattggcaatgttt
gcctcatcttctttgccacagcctgcatttctgaaggcttattcaagtaagcattgttgg
acagcattgcagatattacagaccgctttgcctgctctatttgactgctccagtgagaga
tacctaattaagggaagtgacatattgagacttgatctcaatagagatattatccctgtg
gtgatcaatgacatggcgacatctattttctttgagaggggctctgaagaggttctgaaa
ttcttcaactcattacagcctttgctgatggagcatatgttttcagaaggtttcagtgtt
agcttggaagatttctctatgtgcttggaatccatacaacaaattcagaagggtattctg
gatatttctcctctgctgtttcacctgaaatcaacgcacaatgagctgctggaattgcag
ttggagagtcatattcgtgttgtgaaaaccccagttataaatttcgttctggagtcatct
gctttgggtgatttgattgactccaaaagtgattctgccatcaacaaagtagttcaacag
attgggttccttggcctgcagatttcagatcaaggaaagttctacaccaagacactggtt
gaggatgtttcttccctgtacaaaaacaaatatccttttgaaagaattgattatccttct
gcagagtatggactggtgaagagctgcttcttccatgggttggatccatatgaagaaatg
gttcattcaatctctactcgggaagtaatcgtccggtcatctagaggtttgacagaacct
ggaactctcttcaaaaatttgatggccatccttcgggatgttattatctgttatgatggc
acagtcagaaacgtgtgtagcaattccatcattcagtttgactatgggctgaagacagga
actgggcctcaaaatttttaccctcctggtgaacctgttggtatgttagctgcaactgca
atgtcaaatccagcatataaagcagttcttgattctactccaagcagcacttcctcatgg
caactgatgaaggaagtacttctttccagtgccagttttaagaatgacattgttgatcgg
cgtgtaattttgtatttgaatgcctgtgactgtccaagaaaatactgccgagaaaatgcg
gcctattcggttaagaaccagttgaaaaaagttagtcttaaggataccgcagtggagttc
ttgattgaatataagcagtctgtgttgcgagggtatcatagtgatgctggccttgttgga
catcttcatttgaatgaggtgctgctcaaagagttgaatctcaccatgcaagacattctt
caaaaatgtcaagacactgttaattcacaccgtaagaagaagaaagataaagtttttaaa
aaagcagttttgtctatctgtgagtgttgctcttttcagcaattttcttcaaatgaagga
tctgaagtaccttgcctgatgttagaatggcaagatgcagaaagtggtatccctttagag
gaaacttcacgtatacttgcagatttgatttgcccagttctgttgaaaacaaccatcaaa
ggtgatccccggatttgttcagcaaatataatctggataaatccaaatacaacaatttgg
ataagaaatggacgcaaatcttcgaagggtgaactggctgtggatgttgttttggagaaa
tcagctgtcaagcaaagtggtgatgcatggagggtagtccttgattcgtgccttcctgtg
cttcatttaattgacaccaggcgttccgttccatacgccatcaaacaagttcaagacttg
ctggggatttcttgtgcttttgatcaagcagttgagcgcttagcaaaatcggtatcaatg
gtggccaaaggtgttctgaaagagcatctcatcctcttggcaaacagtatgacttgtacg
ggtaatttgattggctttaattctggtggttataaagcattatctcgctcattgaatgtc
caagttccgtttactgatgctacactttttacaccaaaaaggtgttttgagagagcagcg
gaaaagtgtcatatggatactttggatagcatagttgcaacatgttcctggggtaagcat
gttgcagttggtactggatcaaggtttgatatcttgtgggacacaagagaggtggaattg
aatcaaggtggagttgatgtttacgactttttagatctaatgactactgcagatagagaa
gaatcaactactgcatgtctaggtgcagaaattgatgatctcatgttagaagatgaaatt
gcagaagatgaaaatggagagttgaggctatcccctaactggggaagtttctctcctaca
aaagaccaagaagacacatcgaaggaaagcggttgggaaactgtggttgcttggcaaaat
aaagctaaagagaatacgtcacaaccaaatatgtggtcaggttgggagagaaatgaagct
caagcacagagggcagaatctagtgactgggataacaaggcaactcccgaaaaatttcca
gctcgttggtcatcaaatgctgaagactggactgaaactgcacatccatcccaagaacat
aatgagcctcgtaaagctgaagataaaatgacaaagcctaatgtttggtcctcttgggga
gcagatgaaactcaaacagataggggagagcgttgtgactggggtaacaaggtcataccc
aaaaaagctgtggctcattggtcttcttcaaatactgatgactggactgaaaatgcacat
ccatctccgatagaggaacttgctgagcttccaaaaggtgaagataatatatcaaagcca
aatgttaggtcagcttgggggcgagatgaaactcaaacccaagggagtgagccttgtgat
tggaacaccaaggtcactcctagaaaaacagtggatggttggtcttcttcacatgatgat
gactggactggaactgctcacacatctcaagcagtggaacatgctgagcctcctgctgcc
aatcattcttgggggcagcaaaagtcccccaaaagtgttcaaagttggggccagaaaaca
tctccggaagtttcctcagattggaagcagcaaaagtctccggaaagctctcaaggttgg
gggcagaagaagtctcccaaaagtgcccatagttggaggcagcaaaactctccagaaatt
ttccaagattgtgagcagcaaaagcctcaggaaagttcccaaggttgggagcggcaaaag
tctcctgaacattcccaaggttggggacaccaaaagtccaaggaaagttccaaaggttgg
gagcagcaaacgtcgtctcctgaacattcccaaggttggggccaccaaaagtctgaggaa
aattcccaaagttgggagcagcaaaagtctcatgagcattcccaaggttgggggcagcca
aagtctcaagaaagttcccaaggttggggacagcaaaagactttggaaagttcccaaggt
aggggacggcaaaagtctcctgaaagttcccaaggctggacctctcaagtagagtcgaag
ccagcagcaagttcacatggttgggaatcaccaaaagctggatatgatagtgagaaacag
aagcagtggggacagaggagtggagaaccttacaagaacaatcgttttgaaggctcaagg
ggcaggggttcaaatgctggagaatggaagagtaggaaaagctggcccaataaaacacat
ggaatggggagtgaaaattttagcggggctgcggctggattatttacagcaacaagacag
agaatagatatttttacctctgaggaacaagatgctctctccaccatcgaaccaatcatg
cactccatcagacgaattatgcatcaatctgggtacggtgatggggatccactgtcagat
gctgatcaatcatacatactcgataatgtcttcaattaccatcccgataaagccactaaa
acgggttctggaattgatcatcttacaattagcaggcacagcagttttcaggacagccgg
tgcttatacattgtctcaacagacggtcgtaaagtagatttttcttaccgcaaatgcttg
gagaatttgatcaaaaccaagtatcctgatgttgcagaagcattcatgagcaagtatttt
agaaagccccgctctggagtgaatcgagaacgaacccccagtcttgtgcaaactccgaat
gaaaacctctttcctgagcacactccgaatgagaaccccatttcagagcaaacggcaagt
gaaaatgcatag

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