Ziziphus jujuba (Chinese jujube): 107412948
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Entry
107412948 CDS
T04794
Name
(RefSeq) uncharacterized protein LOC107412948 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107412948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zju03021
]
107412948
03019 Messenger RNA biogenesis [BR:
zju03019
]
107412948
Transcription machinery [BR:
zju03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107412948
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107412948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
107412948
NCBI-ProteinID:
XP_015876278
UniProt:
A0A6P3ZEI0
LinkDB
All DBs
Position
8:join(6482030..6482110,6482262..6483059,6483473..6483579,6483657..6483733,6484510..6484579,6484861..6484951,6485028..6485090,6485835..6486434)
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AA seq
628 aa
AA seq
DB search
MLPFHSSFPQLPNQTQTPSSSAPNRQQNSMPIQPHFGGGNPQFPIPFSNSGNFLSNGHGV
PMTNVPPSMVTQPGFMNAQNHLLPLQNSNLGMPYLASSGPIPQMGQPHVGFGSQGSVNNM
NSVGSFPFRGQVCNLAQQGNPSPSPGQAFGNNLLNLPQQLNQSMGLPFAQLCMPNQFQNI
NQFLPMQMSNPSQFVPRNNAFGFLNQASQATVPHNPTFLANSQFGNVQSNQVGQQDNQNQ
HNLHPPTVDVNAWRPSQVGTQQWQGNSSTPNIPSSIQPDKTDNLQPSAVKGSQGNPTKLN
GHNNSNSNWRNPQGKNFTRNPKRGVQRGGFQNSQFHHMKNGKKKFGFPNGQKGKGLRNEM
AGKAGIANSSNQGREQRRSLSLLYSEEEIKQWREERRKHYPSKANLDKKLAAKMIGTEVI
EREAQIRREQLKEILAKQAELGVEVAEIPSHYLSDSKKQGHGREESRGPMTRNERLQNKF
DKRGRYDKKDRFGKKRRLHNDGSSDVPSLSRRKPTLLQKLLDTDVRRDKSRLLQVFRFMS
LNSFFKDWPGKPLDFPSVIVKESGCGDNVVEATSPHAGKDVAQVSVNTMVEKVDDNDNDD
DDEYEDGDNSTDENENDEDIQEEGEIIN
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcttccttttcactcttcgtttcctcagcttcccaaccaaacccaaaccccttcttcc
tctgctccaaatcgtcaacagaattccatgccaattcaacctcattttggtggaggcaat
cctcaatttccgattcctttcagtaattctggcaacttcttgagcaatggccatggagtt
cccatgaccaatgtcccgccatcaatggtaactcaacctggtttcatgaatgctcagaac
catcttcttcccttgcaaaatagtaatctgggtatgccttatttagcttcttcaggtcct
attcctcaaatgggtcaaccccatgtgggatttggttcacagggtagtgtaaacaatatg
aactcggttggatcgtttccgtttcgtgggcaagtatgcaatttggcacagcaaggcaat
ccatctccatctcctgggcaagcatttgggaataatttattgaatttaccacaacagctc
aatcagagtatgggtttgccgtttgcgcaattatgtatgccgaatcagtttcagaatatt
aaccagtttttgcccatgcaaatgtctaatccttctcagtttgttcctcgtaataatgca
tttgggtttctgaatcaagcttctcaggctacggttcctcataatcccacctttttagca
aattcacagtttggtaatgtgcagtccaatcaagttggacagcaagataaccagaatcag
cataacttgcatccacctacggtggatgtgaatgcgtggagaccatcacaggttggaact
cagcaatggcaagggaactcatctacaccgaatataccaagttctattcaaccagataaa
actgataacttgcaaccttctgcagtgaaggggtcacagggaaatcctacaaaacttaat
ggacataataattcaaattccaactggagaaatccccagggcaaaaattttacaaggaat
ccaaaaagaggggtgcagcgaggaggattccagaattctcagtttcatcatatgaaaaat
ggaaagaaaaagtttggttttcctaacggacagaagggaaaagggctaagaaatgagatg
gcaggaaaggctggtattgccaactcttccaaccaaggcagggaacagagaagatctctt
tctttgttgtactcggaagaagaaattaaacagtggcgtgaagagcgcaggaaacactac
ccatcaaaagccaacctagacaagaagctagctgcaaagatgataggcacagaagtcatt
gagagagaggcacaaatacgacgagagcaactcaaggagattctagctaagcaggcagaa
ctgggagttgaagttgcagaaataccatctcactatctctcagattcaaaaaaacaaggg
catggaagagaagagagtagaggaccaatgacaaggaatgaaagattgcaaaacaagttt
gataaaagaggaagatatgataaaaaagaccggtttggaaagaagcgaagattacataat
gatggttcatctgatgttccttctttgagtcggaggaaaccaacacttttgcagaagctt
cttgatacagatgtaaggagagataaaagccgcttgctgcaggtttttaggttcatgtcg
ttgaattctttcttcaaagattggcctggaaaacctttggactttccttctgtaatagtc
aaagaatctgggtgtggggataatgtggttgaagcaacgtctccacatgcaggaaaggat
gtcgctcaagttagtgttaataccatggttgaaaaagttgatgataatgacaatgacgat
gatgacgaatatgaagatggagataacagcactgatgagaatgaaaatgacgaagatata
caggaagagggcgaaattatcaactag
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