KEGG   Ziziphus jujuba (Chinese jujube): 107413059
Entry
107413059         CDS       T04794                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107413059
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107413059
   03012 Translation factors [BR:zju03012]
    107413059
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107413059
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     107413059
Translation factors [BR:zju03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    107413059
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N dsrm AAA_22 nSTAND3 AAA_19 ATPase T2SSE AAA_16 Myosin_head ABC_tran PhoH AAA_23 HJURP_C
Other DBs
NCBI-GeneID: 107413059
NCBI-ProteinID: XP_048326996
LinkDB
Position
8:complement(join(7128748..7129218,7129919..7130029,7130134..7130286,7131096..7131155,7131243..7131551,7131980..7132128,7132236..7132305,7132603..7132806,7133563..7133757,7134090..7134362,7135373..7135543,7136911..7137041,7137134..7137293,7137438..7137626,7139062..7139157,7139442..7139678,7139781..7139868,7139974..7140128,7140758..7141039))
AA seq 1167 aa
MRNSKPALGFLLARAKSFSNSFCYRTLPSCSSSSSSSSSSSFRANNPLLTLLLLLPPHSS
ISHGLFLIPNRRFCGYAAEQFSDDEYECDFENHQASSSVANIDEWKWKMSLLLRNEKDQE
IVSRDKRDRRDYEQISNLAKRMGLYSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPL
GLQRRVEGLLQEHLDRSQLSSGKVTYNSDDAKFIDQVEDVNQEETADSFLDDSVMEKVLQ
KRSLRMRNMQRTWQESPEGKKMLDFRKSLPSFREKERLLQAIAQNQVIVISGETGCGKTT
QLPQYILESEIESGRGAFCSIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMK
GKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLR
LVLMSATLNAELFSNYFQGAPMIHIPGFAYPVKAHFLEDVLELTGYKLSPFNQIDDYGQE
KMWKTQKQLVPRKRKNQITTLVEDALNKSSFETYSPRARDSLASWVPDCIGFNLIEAVLC
HICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFER
PPHNVRKVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQR
RGRAGRVQPGECYHLYPKCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSSAL
QPPESLAVQNAIGFLKMIGALDEKEKLTELGKFLSMLPVDPKLGKMLIMGAIFRCFDPIL
TIVSGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYC
WRNFLSAQTLQAIHSLRKQFSFILKDAGLVDEDASINNRLSHNQSLARAIICSGLFPGIA
SVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDS
ILILFGGALNQGVQAGNLKMLEGYVDFFMDPSLSECYLKLKEEFNKLIQKKLQDPSLDIH
KEGKYLMLAVQELVSGDQCEGRFVFGRDSKKPKESGNDDRFTRDGMNPKSLLQTLMMRAG
HSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAAVEALAWLTHTSDNSRDE
GDKSPPDVTDNMLKLLGKRRRSKRWSG
NT seq 3504 nt   +upstreamnt  +downstreamnt
atgcgaaattccaagcctgcccttggtttcctcttagcgcgagccaagtccttctccaac
agcttctgctaccgaactcttccttcttgtagtagtagtagtagtagtagtagtagtagt
agttttagggcaaacaatcccttgctcactctgctcctgctactccctccgcattcttcc
atttctcatggcctattccttatccctaaccgtcgcttctgcggatacgccgccgagcaa
ttctcagacgacgagtacgaatgcgattttgagaaccatcaggcatcttcttcagtggcc
aacattgatgagtggaaatggaaaatgagcttgctactacgcaatgaaaaggaccaagag
attgtatcaagagataagagagataggagagactatgagcagatatctaaccttgcaaaa
aggatgggtctttatagtgaaatgtatgggaaggtggtggttgccagcaaggttccactt
cctaactatagaccagatttggatgataagcggccacaaagggaggtggttataccacta
ggtttgcaaagaagggtagaaggtttactgcaggagcacttagatcgaagtcaattaagt
tctggaaaggtcacttacaattcagatgatgctaagttcattgaccaggttgaagatgtc
aatcaggaagagactgctgattctttccttgatgactctgttatggagaaagttcttcag
aaacggagtttgcgaatgcgtaatatgcaaagaacttggcaggaatcaccagaaggcaag
aaaatgctggacttccggaaatctctgccatcattcagggagaaggaaaggctactccaa
gcaattgcacaaaatcaggtgatagtaatatctggagagactggatgtggcaagaccact
caacttcctcaatacatattggaatcggaaatagaatctggacgtggagcattctgtagt
atcatatgtactcagcctagaagaatctctgccatggctgtttcagaaagagtgtctgca
gagagaggagagccacttggtgaaacggttggctataaagttcgattagagggaatgaaa
gggaaaaacacccatctgcttttttgtacaagcggtattctacttcggcgtttgctgagt
gatcgcaatttaaatggtataacccatgttttcgttgatgaaattcatgagcgaggaatg
aatgaagactttctattgattgtattgaaggatctactgccacgtcgtagggatttgcgc
ctagttttaatgagtgccactctaaatgctgaactgttttccaattattttcaaggggca
ccaatgattcatattcctggctttgcttatcctgtaaaagcacactttttggaagatgta
ctggaattaacaggatataaactctctcccttcaaccaaattgatgattatggccaagag
aaaatgtggaaaacacagaaacagttagttccaaggaaaagaaaaaaccagatcacaaca
cttgtagaggatgctcttaataaatcaagctttgaaacctatagccccagggcacgtgat
tctctagcatcatgggtgcctgattgcataggattcaatcttattgaggcagttctatgc
cacatatgtcgaaaggagcgaccaggtgctgttttagtgttcatgactgggtgggaggat
atcagctgcttgagagatcaacttaaagcgcatcctcttttgggtgatcctaacagagtt
ttgcttctaacttgccatggttcaatggcaacatctgaacagaaactcatatttgagaga
ccacctcataatgtgcgtaaagtaattcttgctacaaatatggcagaggcaagcattaca
atcaatgatatagtttttgttgttgactgtggaaaagcaaaagagacaacttatgatgct
ctaaataatacaccttgtctactaccatcttggatatcacaagcatctgcacgacagaga
aggggtagggctggccgtgtacaaccaggtgaatgttaccacctctaccccaaatgtgtt
tatgaagcttttgcagaatatcaacttccagaacttctgagaactcctttgaactctctc
tgcttgcaaataaaaagcttgcaggttgaaagtataggagaatttttgtcatctgccctg
cagccgccagaatcacttgctgtccaaaatgctattggttttctgaagatgattggagca
ttagatgagaaggaaaaattgaccgagcttggaaagttcttgtcaatgcttccagtagat
cccaagcttgggaaaatgctgatcatgggtgctatctttcgttgctttgatcctattctt
acaatagtatctgggcttagtgtcagggatcctttcttattgcctcaagacaaaaaagac
ttagcagggacagcaaagtctagattttctgcaaaagattacagtgatcatatggctctt
gttcgtgcatatgaaggatggaaagatgcagaaagagaaggatctgcatatgagtattgc
tggagaaattttctctcagctcaaactcttcaggctatccattctcttcggaagcagttt
agcttcattttaaaagatgctggcttggtagatgaagatgcaagcatcaacaacagatta
agtcacaaccaatcattagcccgtgcaattatttgttctggcctttttcctggcatagca
tctgtagtgcaccgagagacatccatgtctttcaaaacaatggatgatggccaggtttta
ctatatgcgaattctgtgaatgcacgttaccaaactattccttatccatggctggtgttt
ggtgaaaaagtgaaggtcaatactgttttcatacgtgattccactggtgtctcagattca
atactcattctttttggtggtgcgctgaaccaaggagtgcaggctggaaatttgaaaatg
ttggaagggtatgttgacttctttatggatcctagtttgtcagaatgctatttgaagcta
aaggaagaattcaataagctcatccaaaagaagctccaagatcctagcctggacattcac
aaggaagggaaatatcttatgcttgcggttcaagagctggtatctggagatcaatgtgaa
gggagatttgtatttggcagggatagcaagaagccaaaggagtctggtaatgatgacaga
ttcacaagagatggaatgaatcccaagagcttgcttcaaactctgatgatgagggcaggg
cactctcctccaaaatacaaaacaaagcacctcaagacaaatgagtttagagcactggta
gagttcaagggtatgcaatttgttggaaaacctaagaaaaacaagcagcttgctgaaagg
gatgctgctgtagaggcattggcatggttaactcatacttctgacaacagtcgggatgaa
ggtgacaagtccccacctgatgtgactgacaacatgcttaaacttcttgggaaacgtaga
agatcaaagcgttggtctggttga

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