Ziziphus jujuba (Chinese jujube): 107413117
Help
Entry
107413117 CDS
T04794
Name
(RefSeq) phytochrome E isoform X1
KO
K12123
phytochrome E
Organism
zju
Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09190 Not Included in Pathway or Brite
09193 Unclassified: signaling and cellular processes
99995 Signaling proteins
107413117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_4
PAS_9
Motif
Other DBs
NCBI-GeneID:
107413117
NCBI-ProteinID:
XP_048323668
UniProt:
A0ABM3I962
LinkDB
All DBs
Position
1:complement(join(6118140..6118383,6118867..6119160,6119580..6120387,6120520..6120576,6120929..6122975))
Genome browser
AA seq
1149 aa
AA seq
DB search
MERGSGERGTTTFSSSAASNMRPNTNTNTSTTQKGKEIAQYNADAGLMAEFEHSGVSGKS
FNYSRSVLDAPLTVPEEQITAYLSKIQRGGLIQPFGCMLAIEESTFKIIGFSENCFEFLG
LGSQFESNQLKGLIGIDARALFTPSSGASLAKAVASREISLLNPIWVCSRSNHRPFYAIL
HRIDVGTVIDLEPARSGDPALSFAGAVQSQKLAIRAISRLQSLPGGDIGVLCDIVVEEVQ
KLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMIC
DCNANPVKVIQSEDLKQPLCLVNSTLRSPHGCHTQYMNNMGSIASLVMAVIINGNDATKL
WGLVVCHHTSSRYVPFPLRYACEFFMQAFGLQLYMELQLASQLAEKKILRTQTLLCDMLL
RDAPFGVVTQTPSIMDLVKCDGAALYYGGTCWLLGVTPTESEVKDIAEWLLRNHGDSTGL
STDSLADAGYPGAALLGDAVCGMATARITTKDFLFWFRSHTAKEMKWGGAKHHPEDKDDG
GRMHPRSSFIAFLEVVKSRSLPWEVSEINAIHSLQLVMRDSFQDMEDSGSKAVNYSRQSD
DTELRGMDKLSFVACEMVKLIETATVPIFGVDSGGLINGWNAKIAELTGLQANEAMGKSL
VNEVIHEDSRRVVGHLLNRALQDLNAQSPSVPAEICNNQEHCEEDRNIEIKLKNFGLSQE
NKIIYIVANTCTSRDYTNAVVGVCFVGQDVTCEKVVMDKFIRLQGDYKAIIQSLNPLIPP
IFASDENACCSEWNAAMAKLTGWRRDEVLGKMLTGEIFGSFCRLKGQDTLTKFMILLYQG
ISGQDIEKVPFEFFDRRGKFVEVLLTANKRIDAGGNIIGCFCFLQIVVPDLQQTLEGCSQ
EDRAHYSKLKELTYIRQEMKNPLNGIRFTHKLLENTAISDNQKQFLDTSDACERQILTII
EDMDLGSIEEGSIELNMEEFLLGDVLDAIVSQVMIMIRQKNLQLFHEIPKELKSLRLYGD
RMKLQLVLSDFFLNVVHHAPVSNGWVEIKISPRLKFMKDVNEFIRLQFRMTHPGQGIPSA
LIQDMIEGGNQWTTKEGLGLNLSRKLVNRMNGQVQYIREHNKCFFLIDLEFKMVKNNGGS
LADTGRITS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggagcgtggaagtggagaaagaggcactacaactttctcatcatcagctgcaagcaac
atgaggcccaacaccaacactaacaccagcaccacccaaaaaggtaaagaaattgctcag
tacaatgcagatgctgggcttatggctgagtttgaacactctggtgtctctggtaagtcc
tttaactattcaagatcagttcttgatgctccactgactgtacctgaggaacaaattact
gcttacttgtcaaaaatccagaggggtggtctcatccagccctttggctgtatgctcgca
attgaggagtccactttcaagattatcggtttcagtgagaattgctttgaattcttgggt
ttaggcagtcagtttgagtcaaaccagttgaagggtctgattggaattgatgctagagca
ctttttacaccttcttctggtgcttcactggcgaaagctgttgcttccagagagatatca
ctgttgaaccccatttgggtttgttctaggagtaaccataggccattttatgctatacta
catagaattgatgtgggaactgtaattgacttggagcctgctaggtcgggtgaccctgca
ttgtcatttgcaggtgcagtgcagtcacagaaacttgctattcgagcaatttctaggctg
cagtctcttcctgggggagatattggtgtgttatgtgacatagttgttgaggaagttcag
aaacttactgggtatgatagagttatggtttataagttccatgaggatgatcatggtgaa
gtggtgtctgaaatcaggaggtcagatttagaaccttacttgggtttacactatcctgcc
acagatattccacaggctgctcggttcttgttcaagcagaaccgtgttagaatgatttgt
gattgcaatgcaaacccggttaaggtcatccaaagtgaagacttaaaacagcctctgtgc
ttggtcaactcaaccctcaggtcaccacatggttgccacacacagtacatgaacaacatg
ggttcaattgcctcattagtaatggcagttattataaatggtaatgatgcaacaaagctt
tgggggttggtagtgtgccaccatacttcctcccggtatgtccctttcccacttcgttat
gcttgtgagttttttatgcaggcattcggtctgcagctctatatggagcttcagttggca
tcacaattggcagagaaaaagattctcagaacacaaaccttactatgtgacatgcttctc
cgagatgccccatttggtgttgtgactcagacccctagtataatggatcttgtgaagtgt
gatggggctgcactgtattatggaggaacatgttggttactgggtgtaactccaactgaa
tcagaggtgaaagatattgcagagtggttgcttcgtaatcatggtgattctacagggttg
agtactgatagtttggcagatgctggttatccaggtgctgctttgctaggtgatgctgtt
tgtgggatggctactgcaagaatcactacaaaggatttcttattttggttcaggtctcac
actgcaaaggaaatgaaatggggaggggctaagcatcatcctgaggataaggatgatggt
ggaagaatgcaccctagatcatcatttatagcttttcttgaagtagtgaagagtagaagt
ttgccttgggaggtttcagaaataaatgctattcactctttacagcttgtaatgagagat
tcgtttcaggatatggaggacagcggttctaaggcagtgaattattcccggcagagtgat
gatactgagttgcgagggatggataaactcagttttgttgcatgtgagatggttaaatta
attgagacagcaacagttccaatttttggggttgattcaggtggtcttattaatggatgg
aatgcaaaaattgctgaattgacgggcttacaagctaacgaagctatggggaagtcccta
gttaatgaagtcatccacgaggactcacgtagagttgtaggacatcttctaaacagagct
ttgcaagatcttaatgctcagtcaccgtctgttccagcagaaatttgcaataatcaggag
cattgtgaggaagaccggaatattgagataaaactgaaaaattttgggctttcacaggaa
aacaaaattatatatattgtggccaatacatgcactagtagagattacacaaacgcagtg
gttggggtgtgttttgtgggccaagatgttacttgtgaaaaagttgttatggataaattc
atccgcttgcaaggcgattacaaggctatcatacagagtcttaatccactgattcctccc
atatttgcatctgatgagaatgcctgctgttctgaatggaatgctgcaatggcaaaactg
actggttggagaagagatgaagttctcggtaaaatgctaactggcgaaatctttggaagt
ttctgtaggctaaaaggtcaagatacactaactaaattcatgattcttttatatcaagga
atcagtggtcaagatattgagaaagtcccatttgagttttttgatagaagagggaaattt
gttgaggttttattaacagcaaacaagaggatcgatgctggtggcaacataattggatgt
ttctgtttcctccagattgttgtgcccgatctgcagcaaaccttagaaggatgcagtcag
gaagatagagcacattactcaaaacttaaagagttgacttatataagacaagagatgaaa
aatccgttaaacggtattcgatttacacacaagctcctggaaaatacggctatatcagat
aatcagaagcaatttcttgatactagtgatgcatgtgaaagacagatactgacaatcata
gaggatatggatttgggaagcatagaggaaggcagcatagagctgaacatggaggaattt
ctgttgggagatgttttggatgccattgttagtcaagtaatgatcatgattaggcaaaag
aatttgcagctttttcatgagattccgaaagaactaaaatcattacgtctctatggcgat
cggatgaagcttcagttggtcttgtcagatttctttctcaatgtggtgcatcatgcacct
gtctcaaatggctgggttgaaatcaaaatttcccctcgcctgaagtttatgaaggatgtc
aatgaatttattcgtttacagttcagaatgactcaccccggtcaaggcattccttctgct
ctaattcaagacatgatcgagggaggaaaccaatggacaacaaaggaaggactcgggcta
aacttgtctaggaaacttgtcaataggatgaatggtcaggtccagtacattagagagcat
aataaatgtttcttcctcatcgacctcgaatttaaaatggtaaaaaataatggaggatca
ctggcagatacaggcaggattacttcttaa
DBGET
integrated database retrieval system
