KEGG   Ziziphus jujuba (Chinese jujube): 107413310
Entry
107413310         CDS       T04794                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107413310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107413310
   03012 Translation factors [BR:zju03012]
    107413310
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107413310
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     107413310
Translation factors [BR:zju03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    107413310
SSDB
Motif
Pfam: OB_NTP_bind HA2_C DEAD Helicase_C dsrm HA2_N AAA_22 nSTAND3 AAA_19 NACHT Dicer_dimer ATPase T2SSE NV_polyhedrin PhoH ABC_tran AAA_11
Other DBs
NCBI-GeneID: 107413310
NCBI-ProteinID: XP_048318290
LinkDB
Position
12:complement(join(21489493..21489954,21490128..21490238,21490373..21490525,21490611..21490670,21491272..21491577,21492393..21492541,21492665..21492734,21493058..21493261,21493878..21494072,21494531..21494803,21494887..21495054,21495989..21496119,21496190..21496349,21496455..21496643,21497038..21497133,21497530..21497775,21498108..21498195,21498282..21498436,21498864..21499163))
AA seq 1171 aa
MKDRPPPSYGAVYVPPHHRLRSVITSPNYTSSAALVDSRLRENHHQSAVLNPRSSSVHLS
NLKNQQEEQFQKQTFHYNSAYDDGLSEEGSDREFDSSSHPGASPSDNINDWKRKLTLLLR
DKEKQELVSREKKDRRDFEEIAVLASRMGLYSHLYVKVAVFSKVPLPNYRFDLDDRRPQR
EVILPLGLLRRIESYLGEFLSQKSRTKGSFSDVSFSRSSSNCSIATDEGLFEVPEPLASS
KVVMDKILWRRSLQLQDQQQAWQESPEGRKMLEFRRSLPAYKEKDAVLAAISQNQVVIIS
GETGCGKTTQIPQFILESEIESVCGAACSIICTQPRRISAMSVSERIASERGEKLGESVG
YKVRLEGIKGRDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKE
LLPRRPELRLILMSATLDAELFASYFGRAQIIHIPGFTYPVQTHFLEDILEMTGYRLTPY
NQIDDYGQEKMWKMSKQAPRKRKSQIASVVEDALKAADLKFYSHRTWESLSCWNPDCIGF
NLIEFLLCNICEKERPGAILVFMTGWDDISSLKDKLQAHPILGDPSRVLLLACHGSMASS
EQRLIFDEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWI
SKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLKLGSI
SEFLSKALQSPELLAVQNAIEYLKIIGALDENENLTVLGRYLTMLPVEPKLGKMLLLGAI
LNCLDPILTVVSGLSVRDPFLTPFDKKDLAETAKSQFSRDYSDHLALIRAYEGWVDAERD
YAGYDYCWMNFLSAQSMKAIDSLRKEFFSLLKDAGLIDANDTSYNTWSYDEHLIRAVICY
GLYPGICSIVHTEKSFSLKTMEDGPVLLYSNSVSAREAKIPYPWLVFNEKIKVNSVFLRD
STAVSDSVLLLFGGSMSRGDIDGHIKMLGGYLEFFMKPAVADMYECLRRELDDLIQIKLL
NPKLSIYNYHELLSAVRLLISEDHCEGRFVFGRQILKPSKPSAISAQPALASRTESGPGG
DNSKSQLQTLLTRAGHAAPTYKTKQLKNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAE
ALQWLMGETQTGHEYVNHMSMLLKKSKKDHN
NT seq 3516 nt   +upstreamnt  +downstreamnt
atgaaggatcggcctcctccttcatacggcgcagtttacgtccctcctcaccatcgcctc
cgctccgtcatcacatcccctaattatacttcctctgctgctttggttgactccaggctc
cgagagaatcatcatcagagtgcggttttaaaccctagaagtagtagtgttcacctttcg
aacctcaagaatcagcaggaggaacagttccagaagcaaacttttcactacaattctgct
tatgacgatgggctttctgaggaaggatctgatcgtgaatttgattcgtcctctcatcct
ggtgcttccccttctgataacatcaatgactggaaaagaaagttaaccttgcttttacga
gacaaagagaaacaagagttggtttccagggagaaaaaggacaggcgtgattttgaggaa
atagctgttttagctagcaggatggggctttatagccatctctatgtaaaagttgctgtc
tttagtaaagtcccactgccaaactacagatttgatcttgatgataggcgcccgcagaga
gaggtcatcttgcctcttggattgctgaggaggattgagtcctatcttggggagttccta
tctcaaaagtctaggactaagggaagcttttcagatgtgtccttttctagatcgagcagt
aattgtagtatagccactgatgaaggtctttttgaggtacctgagcctctggcttccagt
aaggttgtgatggacaaaattctttggcgaagaagcttgcaactgcaggatcagcaacaa
gcttggcaggaatctcctgaaggtaggaaaatgctggaatttcgtagaagtcttcctgct
tataaagagaaggatgcagtattggccgccatttcacagaatcaggttgttatcatttca
ggtgaaactggctgtggaaagaccacacaaattccacaattcattttagaatctgagata
gaatctgtctgtggagctgcttgtagtattatatgtacacagcctagacgaatttctgcc
atgtccgtatctgaaagaattgcttctgagaggggagagaaattgggtgaatcagttggg
tataaagtacggttagaaggtataaaaggaagggatactcaccttctcttttgcaccact
ggcatcttgttgagaagattgcttgttgacagaaacttgaaaggggtaactcatgttatt
gtagatgagatccatgaacgtggaatgaatgaagattttctgctaattgttctaaaggag
cttcttcctcgtcgaccagaactaagactgattctgatgagtgccaccctggatgcagaa
ttgtttgcatcctattttggtagggcacagataattcacattccgggatttacatatcca
gttcaaactcattttctggaggacattctggaaatgacgggttacaggttaacaccatac
aaccaaattgatgattatggtcaagaaaagatgtggaaaatgagcaaacaagcaccaaga
aagaggaaaagccagattgcttctgttgtggaggatgctttaaaagctgctgatttaaaa
ttttatagccaccggacttgggaatctctttcatgctggaatcctgattgcattggtttt
aatctcatagagtttttattatgcaatatctgtgagaaagaaagaccaggtgctattctg
gtttttatgacggggtgggatgacataagttctctaaaggataagcttcaagctcatcct
attttaggcgatcctagccgagtcttgttgctagcatgccatggttcaatggccagttct
gagcagaggttaatatttgatgagcctgaagatggagtgaggaaaatagtactagcaact
aacattgctgagacaagtatcacaataaatgatgttgtttttgttcttgattgcggaaag
gcaaaagagacatcttatgatgcactgaataacactccatgtttgcttccatcatggata
tccaaggtttctgctcaacaaagaagaggaagggctggccgtgttcagcctggagaatgt
taccatctctatcctagatgtgtatatgatgcttttgctgagtatcaattgcctgaaatt
ttgaggacgcctttgcagtctctttgtctgcaaataaaaagtttaaagcttggaagtatt
tctgagttcctgtctaaggctttgcaatcgccagagttgttagcggtgcaaaatgctatt
gaatatttgaaaatcatcggggccttggatgagaatgaaaatctgactgttttaggacgc
tatctaactatgcttccagtggagccaaagcttggaaagatgctcctgttgggtgccatc
ttaaattgccttgaccccattttgactgttgtttctggccttagtgtcagagatcctttc
ttaactccgtttgacaagaaggatcttgcagagactgcaaaatctcagttttcccgtgac
tacagtgatcaccttgcacttatcagggcctatgagggatgggtagatgctgaaagagac
tatgctggttacgattactgctggatgaattttctttctgcccaatcaatgaaagcaatt
gattctcttaggaaggagttcttctctttgctgaaagatgccggtttgattgatgccaac
gacaccagctacaacacttggagctatgatgagcatctcatccgagcagttatttgctat
ggtctatatcctggaatttgctccattgtgcatactgagaagtcattttcattaaaaaca
atggaggatggcccagtgctgctatactcgaactcagtcagtgctcgggaagccaaaatt
ccatatccatggctagttttcaatgagaagataaaagtgaactctgtcttcctccgagat
tcaactgctgtgtctgattcggtgctgcttctctttggtggaagcatgtcaaggggggat
attgatggacacataaagatgttgggaggatatttggaattcttcatgaaacctgctgtc
gccgatatgtacgaatgtttacggagagaacttgatgatctaattcagatcaaactattg
aatcccaagttgagcatatacaactatcatgagctcttatctgcagtgcgattgctaatc
tcagaggatcattgcgaaggaagatttgtgtttggccgccagatcctcaagccatcaaag
ccatctgctattagtgcacaaccagcattggcttcaagaactgaaagtggacctgggggg
gataattctaagagtcaactccagacgttgcttaccagggcaggacatgctgcacccacc
tacaagactaagcaactgaagaacaaccagttccgagcgaccgtggagttcaacggaatg
caaataatgggtcaaccatgtaataacaagaagagtgcagaaaaagatgcggcagccgaa
gctcttcagtggctgatgggagaaacccagacaggccatgagtacgtcaatcacatgtca
atgttgctgaagaaaagcaagaaggatcataattga

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