KEGG   Ziziphus jujuba (Chinese jujube): 107413934
Entry
107413934         CDS       T04794                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107413934
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107413934
   03036 Chromosome and associated proteins [BR:zju03036]
    107413934
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     107413934
   Coactivators
    SAGA/TFTC/STAGA complex
     107413934
Chromosome and associated proteins [BR:zju03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     107413934
    STAGA complex
     107413934
    TFTC complex
     107413934
    SAGA complex
     107413934
    SLIK complex
     107413934
SSDB
Motif
Pfam: WD40_Prp19 WD40 TFIID_NTD2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd NBCH_WD40 ANAPC4_WD40 Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_HPS5 Ge1_WD40 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_NWD2_C Cytochrom_D1 ARMC9_LisH LisH WD_LRWD1 Beta-prop_VPS8 PALB2_WD40
Other DBs
NCBI-GeneID: 107413934
NCBI-ProteinID: XP_048325494
LinkDB
Position
8:join(21707538..21707731,21708330..21708411,21708513..21708591,21708707..21708804,21708891..21708947,21709539..21709626,21709720..21709829,21710623..21710730,21710905..21711056,21711456..21711566,21711665..21711734,21711816..21711855,21712353..21712517,21712639..21712715,21713510..21713626,21713928..21714193,21714296..21714391,21714477..21714552,21714678..21714731)
AA seq 679 aa
MDDESILKFVTEYLKKKGFKQTENAFQEELQNTKTTTTNNNSASPISSTSQFDSDIAKHI
LSLAESENAPTRYQDGYSKLRSWTYSSLDSYRHELLRVLYPVFIHCFMDLVANGHVQEAR
TFFNSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHTLRKSKISIKMCQYSYDLLLQFL
QKPQSTTILGIINEHINFQVSPGPPSSICDDADVVTVIGGSQDAANQINQKEVHWGLLED
SLEERLEKAGSLLSDSEKAEGETKELEWDENKKRSADGGKQGASIKKLKKDKAVNVTGKT
ARPEANSIPTAPRVKPELALPVIPAEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNG
LNCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQAVGSTLQGESDATPNEHTLGSNGGKRP
YTLFQGHSGPVYSATFSPLGDFILSSSSDSTVRLWSSKLNANLVCYKGHNYPVWDVQFSP
VGHYFASASHDRTARIWSMDRVQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWD
VQTGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGAIMMWDLSSGRCVTPLIAHTSCVW
TLAFSCEGSLLASGSADCTVKLWDVTTSTKVSRTEENKSGNTSRLRSLKTLPTKSTPVYS
LRFSRRNLLFAAGALSKTV
NT seq 2040 nt   +upstreamnt  +downstreamnt
atggacgacgaaagtatactgaaattcgtgacggagtacctgaagaagaaagggtttaag
caaacggagaacgcttttcaagaagaacttcaaaataccaagaccaccaccaccaacaac
aattctgcgtctccaatctcttccacttcccaattcgattccgatattgccaagcacatc
ctctcactcgccgaatcagagaatgctccaacacggtatcaggatgggtatagcaagttg
aggtcatggacttatagttctctagattcatacaggcatgaattgcttcgtgtgctttat
ccagtttttatacattgttttatggatctggttgcaaatggtcacgttcaagaagcacgc
actttcttcaatagctttcgtgaagaccatgaaatgatgcacttacgagaccttcaaaag
ttggaaggtgttctttctccatcacatctggaggagatggaatttgctcatactcttagg
aagagcaaaatcagcataaagatgtgtcagtattcctatgaccttctgctgcaatttcta
caaaaaccacagtccacaactatacttgggattatcaatgaacatatcaacttccaggtt
tctcctggaccgccaagctcaatatgtgatgatgctgatgttgtcactgtgattggaggc
agccaggatgcagccaatcaaataaatcagaaggaagtacattgggggttgcttgaagat
tccttggaagaacgcttagaaaaggctgggagtttgctttcagattctgaaaaggcagaa
ggagaaaccaaagaattggaatgggatgagaataagaaaagatctgcggatggaggaaaa
caaggggcttcaattaaaaagttaaaaaaggacaaggctgttaatgtaacaggaaaaact
gcacgtcctgaggctaactctatacctacggcaccacgagtgaaaccagagcttgctttg
ccagtaatcccagctgaggttgaacagtctattcttgaagacttaagaaatcgcgtacag
ttgagtagtgttgcattgccatctgtcagcttttacacatttatcaatacacataacggt
ttaaactgttcatctatatcccatgacggatctttggttgctggtggattttcagactca
tcactgaaggtttgggatatggcaaagcttgggcaacaggctgttggttccactttgcag
ggtgaaagtgatgcaactccaaatgaacatacacttgggtcaaatggaggaaaaagacct
tacacgttatttcagggtcattcaggaccagtttattctgcaacatttagtcctctaggg
gattttatactttcctcctcttcagactcaacagttcggttatggagctcaaaattaaat
gccaaccttgtttgctataagggtcataattatcctgtatgggatgttcagtttagtcct
gtgggacattactttgccagtgcatcacatgatcggactgcaagaatttggtctatggac
agagtacagcctttacgaataatggcagggcatttatctgatgttgattgtgtacaatgg
catgccaactgcaactacattgctaccggttctagtgacaaaacagttcgattgtgggat
gtacaaactggggaatgtgtccgtatattcattggtcacaggagtatgattttgtctttg
gcaatgtcacctgatggtcgatatatggcttctggtgatgaagatggtgcaatcatgatg
tgggacctgtcgagtggccgatgtgttacgcctttgattgctcacacctcatgtgtttgg
acacttgctttcagttgtgaaggctcacttcttgcgtctggttctgctgattgcactgta
aaactatgggatgtaactacaagtactaaggtttctagaaccgaagaaaacaaaagtgga
aatacaagtaggctgagatcattgaaaactctgccaacaaagtctacccctgtctacagt
ctgcgattttctagaaggaatcttctattcgcagctggggctctctcaaaaactgtataa

DBGET integrated database retrieval system