Ziziphus jujuba (Chinese jujube): 107414340
Help
Entry
107414340 CDS
T04794
Name
(RefSeq) E3 ubiquitin protein ligase RIN2 isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107414340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zju04121
]
107414340
Enzymes [BR:
zju01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
107414340
Ubiquitin system [BR:
zju04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107414340
Multi subunit type E3
ERAD complex
107414340
LMBR1L-GP78-UBAC2 complex
107414340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
CUE
zf-rbx1
zf-RING_UBOX
zf-C3HC4_2
zf-ANAPC11
zf-RING_11
zf-C3HC4_3
zf-C3HC4_4
zf-RING_16
zf-RING_5
U-box_ZFPL1
FAR1_N
zf_RING_Vps8_fungal
zf-RING_Vps41
zf-HC5HC2H
RINGv
FANCL_C
PHD
E3_UbLigase_EDD
Endonuclease_7
Motif
Other DBs
NCBI-GeneID:
107414340
NCBI-ProteinID:
XP_015877935
UniProt:
A0A6P3ZRB7
LinkDB
All DBs
Position
8:join(24224013..24224252,24224449..24224526,24225613..24225699,24225799..24225920,24226251..24226347,24226474..24226579,24226692..24226852,24226955..24227092,24227168..24227235,24227312..24227542,24228430..24228811,24229031..24229087)
Genome browser
AA seq
588 aa
AA seq
DB search
MGLKYIAISSVWTVLSFVGLQLWTESSLVKLKSDGLIREAVIDAGNVGHVVDLLLGSYGT
VALIANFVLNVFILLVLFLKTIFFVELYPSETRKLVERLINYVIYKGTFLPLVVPPTIYH
AGLWSIWLTVLCCLKMFQALARDRLERLNASPSATPWTYFRVYSVLLLVFFVDILWIQLC
LVIYQAVSVPVFLLLLYEPFSIMFETLQAILVHGFQLLDIWFHHSAWSSSNCGRFKLFDV
SAAAGSLLEWKGILTRNVGFFLDMATMLMALGHYVHIWRLHGMAFNLVDAVLFLNIRALL
SAIFKRVKGYMKLRKALGALHAALPDATSEELRAYDDECAICREPMAKAKRLNCNHLFHL
SCLRSWLDQGLNEIYSCPTCRKPLFVSRTENEANPPDGEVLSDEQVARQISAGLDRQNTF
GNTLPAGVFPNQTQQSTEGSPWRSAGLDSSWLHTWPSQGVDGAGPSTAMRSVGLGRVQMM
MRHLASVGETYAQTALEDTAWSLWPMNAAQDATAGLPIPPAPGGRYPGGTGGLHMRTVSR
PANDNMANILAMAETVREVLPHVPDELIFEDLQRTNSVTVTVNNLLQM
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgaagtatatagcaatctcgtcagtatggacggtattaagcttcgtaggactc
cagttgtggacagaatcctcgttagttaaactaaaatcagatggattaattcgtgaggct
gttatcgatgccgggaatgttggacatgttgtggatttgcttctgggatcttatgggact
gttgcactaattgcaaattttgtgctcaatgtattcattttactcgttctctttcttaag
actatattctttgtggagttgtatccttctgaaactcggaagttggtggaacgtcttatc
aattatgttatatataagggaacatttttgccactagttgttccacccacaatatatcat
gcaggcctgtggtcaatttggttgactgttctttgttgtttaaagatgtttcaagctttg
gctagagaccgacttgaacgacttaatgcatctccttctgctacaccatggacatatttt
cgtgtctattcagtattgctgttggtcttctttgttgatatactctggatacagttgtgt
ctggtaatataccaagcggtgagcgtacctgtcttccttttgttgttgtatgaacctttc
agtattatgtttgagacactccaggctattttggtgcatggatttcagttgcttgatatt
tggttccatcattcagcatggagcagctcaaattgtggaagatttaaactttttgatgta
tcagcagcagcaggttcattgttggaatggaaaggcattcttacaaggaatgtgggtttt
ttcctggatatggcaacgatgttgatggcacttggtcattatgtgcacatatggcggcta
catggcatggcattcaatctggtggatgctgtccttttcctgaacatacgtgccttacta
agtgcaatatttaagcgtgtaaaaggatatatgaagttgagaaaagctttaggtgctctt
catgcagcacttccagatgcaacatctgaagagttaagagcatacgatgatgaatgtgcc
atttgtagggaacctatggcaaaagcaaagaggctcaattgcaaccacctttttcatctt
tcatgcttgagatcttggttggatcagggtttaaacgagatttattcatgcccaacttgt
cgaaagccactttttgtaagtagaactgaaaatgaggcaaatccacctgatggagaagtt
ttgagtgatgagcaagttgctcgtcaaataagtgcaggacttgatcggcagaatactttc
ggaaacaccctgcctgcaggagtattccctaaccaaacacagcaatctacagagggcagt
ccttggaggagtgcaggattagattcaagttggttgcatacttggccaagccaaggagtt
gatggagctggtccatctacagctatgagatcagttggactggggagagttcagatgatg
atgaggcatcttgcatctgtaggtgaaacgtatgctcagactgctcttgaagatactgcc
tggagcctatggcctatgaatgccgctcaggatgctacggctggtctacctattcctcct
gctcctggtggaagataccctggaggaacaggtggtttacatatgaggactgtctcacgc
cctgcaaatgacaacatggcaaacatacttgccatggcagaaacggtgcgtgaggtttta
cctcacgtcccagatgaattaatttttgaggatttgcagcgaacaaattccgttacagtt
actgtgaataatcttctccaaatgtga
DBGET
integrated database retrieval system
