KEGG   Ziziphus jujuba (Chinese jujube): 107414498
Entry
107414498         CDS       T04794                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
  KO
K14402  cleavage and polyadenylation specificity factor subunit 2
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107414498
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107414498
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     107414498
    U7-dependent histone pre-mRNA processing factors
     107414498
SSDB
Motif
Pfam: Lactamase_B_6 CPSF100_C Beta-Casp RMMBL Lactamase_B Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-GeneID: 107414498
NCBI-ProteinID: XP_048325744
UniProt: A0ABM3ICU8
LinkDB
Position
8:join(25786788..25786936,25787139..25787307,25787562..25787658,25787739..25787865,25787969..25788084,25788256..25788350,25788481..25788632,25788818..25788875,25788952..25789059,25789636..25789888,25790024..25790208,25790365..25790457,25790644..25790742,25790868..25790999,25791085..25791129,25791211..25791378,25791609..25791683,25791839..25791940)
AA seq 740 aa
MGTSVQITPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPISRVASTIDAVLL
SHPDTLHLGALPYAMKQFALSAPVFSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID
SAFQNVTRLTYSQNHHLSGKGEGIVISPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKE
KHLNGINQSSFVRPAVLITDAYNALNNQPYRRQKDKEFTDTIKKTLRADGKVLLPVDTAG
RVLELIQILESCWVEENLNYPIFFLTYVASSTIDYVKSFLEWMSDSIAKSFEKTRDNAFL
LKHVTLLVNKSELDNAPEGPKVVLASMASLEAGFSHDIFVEWATDAKNLVLFTERGQFGT
LARMLQADPPPKAVKVTMSKRVPLVGEELIAYEEEQNRIKKEEALKASIIKEEESKASHG
ADDNTSDPMVIDASSTHPLPDVAGPHGVGYRDILIDGFVPSSTSVAPMFPFYENTSEWDD
FGEVINPDDYVIKDEDMDQAAMHVGGDLDGKLDEGSASLMLDTKPSKVVSNELTVQVKSS
LLYMDFEGRSDARSIKSILSHMAPLKLVLVHGTAEATEHLKQHCLKHVCPHVYAPQIEET
IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENDSLSLQPISTAPPPHK
SVLVGDLKMANFKQFLADNGVQVEFSGGALRCGEYVTLRKVGDASHKGGGSGTQQIVIEG
PLCEEYYKIREYLYSQFYLL
NT seq 2223 nt   +upstreamnt  +downstreamnt
atgggtacttcagtgcagataacaccgctgtgcggtgtgtataacgagaacccattatcg
tatttggtctcaatagacggtttcaacttcttaatcgactgtggctggaatgaccacttc
gatccctctctccttcaacccatctccagggtagcttcgacgattgatgcagtattgcta
tcacacccagatacacttcatcttggtgctctgccatatgcaatgaagcaatttgcgctc
tccgctcctgtcttttccacagagcccgtttacagattagggcttctcactatgtacgat
caatatctctcacggaagcaagtttcagagtttgatctgtttactttggatgatattgat
tctgctttccaaaatgtgaccaggctgacctattctcaaaatcatcacctatctggtaaa
ggggagggaatagtaatttctccacatgtggctgggcatcttttgggaggtactgtgtgg
aagataactaaggatggggaggatgttatatatgcagttgacttcaaccatcgcaaagaa
aagcatttgaatggaattaatcaatcctcttttgtgcggcctgctgttcttataacagat
gcctataatgctttaaacaatcagccttatagacgccaaaaggacaaagaattcacagat
acaataaagaaaactctacgagcagatggaaaggtgttactacctgttgatactgctgga
cgagtattggaacttattcaaattttggaatcgtgctgggtggaggagaatctgaactat
cccatcttctttctaacatatgttgcatctagcaccattgattatgtcaaaagtttcctt
gagtggatgagtgattctatagcaaagtcttttgaaaagacacgtgataatgcatttctt
ctgaagcatgtcacacttttagttaacaagagcgaacttgacaatgctccagagggtccg
aaggttgttttagcatccatggctagtttggaagcaggtttttcccatgatatatttgtt
gaatgggcaactgatgccaagaatcttgtgctgtttaccgaaagaggccagtttggcaca
ttagctcgcatgcttcaggcagatccacctccaaaagctgttaaggtcaccatgtccaag
agggttcctttggttggagaagagcttattgcctatgaagaagagcaaaaccgtataaaa
aaggaagaagctcttaaagctagtattatcaaagaggaggaatcaaaagcatctcacggt
gctgatgataacacaagtgatccgatggttattgatgccagcagtactcaccctctgcca
gatgtggcaggaccacatggtgttggataccgggatatactaattgatggatttgtccct
tcttccaccagtgttgctccaatgtttcccttttatgaaaatacttctgagtgggatgat
tttggtgaagtaataaatcctgatgattatgtaatcaaagatgaagatatggaccaagca
gcaatgcatgtgggtggtgatttggatggaaagcttgatgaaggttctgctagtttaatg
cttgacacaaagccttcaaaagttgtatctaatgaattgactgtacaagtcaagtcttca
ttgctttacatggattttgagggccgttctgatgcacggtccatcaaatcaattctttcc
cacatggctcctctgaagcttgttttggttcatggaacagcagaagccacagaacatttg
aagcagcactgcttgaaacatgtttgtccgcatgtttatgctccccaaattgaagaaaca
attgatgtcacttctgatttgtgtgcttataaggtacaactgtctgagaagctaatgagt
aatgtgctctttaagaagcttggagattatgaaatagcttgggttgatgctgaggttgga
aagacagaaaatgactcgttgtctttacaacccatctcaacagcaccaccaccacataaa
tctgtactcgttggtgatttaaaaatggcgaacttcaagcaatttcttgctgataatggc
gttcaggttgaattttctggtggggctctgcgatgcggtgaatacgtgacacttcgcaag
gttggagatgcaagccacaagggtggtggttctggtactcagcaaattgtcattgaaggc
cctttatgcgaggagtattacaagattcgagagtatctgtattcacagttttatttgctt
taa

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