KEGG   Ziziphus jujuba (Chinese jujube): 107414859
Entry
107414859         CDS       T04794                                 
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE
  KO
K14555  U3 small nucleolar RNA-associated protein 13
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    107414859
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:zju03009]
    107414859
Ribosome biogenesis [BR:zju03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    107414859
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Utp13 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_SCAP Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_Nup120_160 Beta-prop_NWD2_C WD_LRWD1 Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_Vps41 WD40_like Beta-prop_RIG_1st Beta-prop_NOL10_N Cytochrom_D1 RAB3GAP2_N UTP15_C Nbas_N WDR54
Other DBs
NCBI-GeneID: 107414859
NCBI-ProteinID: XP_060675288
LinkDB
Position
8:join(30085919..30086218,30086564..30086746,30086950..30087099,30087670..30087884,30088337..30088619,30088731..30088865,30089083..30089201,30089584..30089740,30089909..30090155,30090258..30090334,30090537..30090656,30091084..30091214,30091291..30091465,30091606..30091941)
AA seq 875 aa
MASLPLKRNYRCVPSLQQFYTGGPFVVSSDGSFIVCVCGESIKIVDSSSASIRSTIDDGD
SEAVTALALSPDGKLLFSAGHSRQIRVWDLSTLKTVRSWKGHDGPVMGMACHPSGGLLAT
AGADRKVLVWDVDGGYCTHYFKGHEGVVSSIMFHPDPSKPLLFSGSDDTNVQVWDILSKK
CISTLKGHHSTVTSLAVSEDGGTLLSAGRDKVVLLWDLHDYSCKKTITTYEILEAMCVIH
SGTRFASCLGLNNQHEGKKSGSLEMYFVTVGERGVVRIWSSERAVCVFEQNSSDVTLSSD
ENESRRGFTATVMLPLDQGLLCVTADQQFLVYSPVEKSMGMELILSKRLIGGNEEIIDMK
FLGDEEQLLAVATNIEQVRVYDLASMSCSYVLAGHTEIVICLDTCVSSSGRTLIATGSRD
KSVRLWESEGRCCLGVGIGHMGAVGAVAFSKKKKDFFVSGSSDRTIKVWSLDGLSDYVGQ
PFNLKAKAAVAAHDKDINSLAVAPNDSLVCSGSQDHTACVWKLPDLVSVVVFKGHKRGIW
SVEFSPVDQCVITASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFLTRGTQFVSCGGDG
LVKLWTIKTNECIATYDQHEEKVWALTVGKKTEMLATGGSDAVINLWYDSTASDKEEAFL
REEEGVLKGQELENAVLDADYSKAIQIAFELRRPHKLFELFAELCRQREAEKHVRKALHA
LGHEDLRQLLDYVKEWNTKPKLCHVAQFVLFTIFNILSPTEIIEMKGIGELLEGLIPYSQ
RHFSRIDRLVRSTFLLDYTLTGMSVIEPETDDVKNSKDNNHLDENLLAADVGEEEKQNDS
QMLNSKSAIRKRKSDKHRDASRTKKVKGVAYTAVF
NT seq 2628 nt   +upstreamnt  +downstreamnt
atggcgtcgcttcctttgaagaggaactatcgctgtgttccatctctgcagcagttctat
accggcgggccattcgtagtctcatcggacggctcctttattgtatgtgtgtgcggcgag
tccatcaagatcgtcgactcctccagtgcgtctatacgttccaccatcgatgatggcgac
tccgaggccgtcacggcattggcgcttagccccgacggcaagctgctcttttccgccggc
cacagtcgccagattagggtctgggacctctccaccttgaaaaccgtgcgctcttggaag
ggccacgatggtcctgtaatgggtatggcttgtcatccatcgggggggttgcttgcgact
gcaggagctgataggaaagtccttgtttgggatgttgacggtggctactgcactcattac
ttcaaaggtcacgaaggtgttgtttcaagtattatgttccatcctgatccgtccaagcca
ctacttttttctggaagcgatgataccaacgtacaagtctgggatattttatctaagaag
tgcatctcaacccttaaaggacatcattcaactgtgacttctttggcagtatctgaagat
ggagggacattactcagtgctggacgagataaggttgtgttgttgtgggatcttcatgac
tatagctgcaagaagactataacaacatatgaaattcttgaagcaatgtgtgtaattcat
tctggtactcgttttgcttcatgtttgggtttgaacaatcagcatgaagggaagaaaagt
gggtcactggaaatgtactttgtaacagttggtgaacgtggagttgttcggatatggagt
tctgaaagagcagtttgtgtttttgagcaaaactcatcagatgttactcttagctcggat
gaaaatgagtctagaaggggcttcactgctactgttatgctaccattggatcaaggcttg
ctatgtgtgacagctgatcagcagtttcttgtttattccccagtcgaaaaatccatgggg
atggagttgatcctaagcaaaagactaataggaggcaatgaagagattatagatatgaag
tttttaggtgatgaagaacaattacttgctgttgctacaaatattgaacaggtacgagtg
tatgacctcgcatccatgtcatgttcttatgttttggctggtcatactgaaattgttata
tgcctggacacctgtgtatcaagttccggaagaacacttatagcaactggaagtagggac
aaaagtgttaggttgtgggaatcagaaggcagatgttgccttggagttggaataggtcat
atgggagctgttggagccgttgctttttcaaaaaagaagaaagacttctttgtaagtgga
agtagtgatcgtactatcaaggtctggagtttggatggtctttctgactatgtgggacag
ccttttaatttgaaagcaaaagctgctgtagcagcacatgataaggatataaattctcta
gctgttgcaccaaatgatagtttagtttgtagtggttctcaggaccacactgcttgtgta
tggaagcttccggatctggtatctgttgttgtatttaaagggcataaaagggggatttgg
tctgttgaattttctccagttgatcaatgtgtgataacggcatcaggggataaaacaata
aagatatgggctatatctgatggttcatgtttgaaaacatttgaggggcatacatcaagt
gtattaagagcatcgtttcttactcgtggaacccaatttgtttcttgtggtggtgatggg
ttggtgaagttatggacgatcaaaaccaatgagtgcattgctacatatgaccagcatgag
gagaaggtttgggccttaactgttgggaagaagacagaaatgctggcaacaggtggcagt
gatgcagttattaatttatggtatgattctacagcatctgataaagaggaagctttcctt
agggaggaggaaggtgttttgaaaggtcaagaactggaaaatgctgtattggatgcagac
tactcgaaagcaattcaaattgcttttgagctccgtaggccacataagctttttgagtta
tttgctgaactttgcaggcagagagaagctgaaaagcatgtaagaaaagcccttcacgca
cttggccatgaagaccttcgtcaacttttggattatgtaaaagaatggaatacaaaacca
aagctctgtcatgttgcacaatttgttctcttcaccatttttaacatcctttctccaaca
gagatcattgagatgaaaggaattggagaactccttgaagggcttatcccatattctcag
aggcattttagccggatcgacaggcttgtgagaagcacatttttgttggactacactctg
acagggatgtctgttattgaaccagagactgatgatgtaaagaattcaaaagataataat
catttggatgaaaatcttttagcagcggatgtgggtgaggaggaaaaacaaaatgattct
caaatgctaaattcaaagtcggctattagaaaacgaaaatcagataagcatagagatgct
tcccgtactaaaaaagtaaagggtgtggcatacactgctgtattttag

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