Ziziphus jujuba (Chinese jujube): 107415072
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Entry
107415072 CDS
T04794
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107415072
03041 Spliceosome [BR:
zju03041
]
107415072
03036 Chromosome and associated proteins [BR:
zju03036
]
107415072
Enzymes [BR:
zju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107415072
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107415072
mRNA cycle factors
Common to processing body (P body) and stress granule
107415072
Spliceosome [BR:
zju03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107415072
Chromosome and associated proteins [BR:
zju03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107415072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107415072
NCBI-ProteinID:
XP_015878830
UniProt:
A0A6P3ZGZ0
LinkDB
All DBs
Position
4:complement(join(33435600..33436091,33436426..33436539,33436830..33436997,33437379..33437621,33438731..33438814,33438900..33439640))
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AA seq
613 aa
AA seq
DB search
MRASWADLAANSAAENVASGTSANNGSAGSASAPTRAAYVPPHLRNRPSSSDPPAPPYGG
TSGNDRAGYGGSRWGGPRNDSNRSGYGGGGRTGGWGSRTGGWDRGKEREVNPFGDDDDAE
RTFNEPENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQ
RHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMKGQGAQRPPRGARTVYPFALILSP
TRELSIQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERA
RVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQGVRQTMLFSATFPKEIQRLAS
DFLSNYVFLAVGRVGSSTDLIVQRVEFVLESDKRSHLMDLLHAQRANGVQGKQALTLVFV
ETKKGADALEHWLCINGFPATTIHGDRTQLEREQALRSFKSGNTPILVATDVAARGLDIP
HVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDNNSSLAKALAELMQESNQEVP
AWLSRYAARSYYGGRKGRSGGGRFGGRDFRRDSSFNRGGSDYYSGGNSAGGGYGGYSGGY
SGGYGPGVTSAWD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcttcttgggctgatttggctgcaaattctgcagctgagaatgtagcttctggt
acttccgctaacaatgggagtgctggctcagcttcagctcctacccgagctgcctatgtt
cctccacatctccggaaccgaccttcttcttctgacccccctgctccaccttatggtggg
acttctggcaatgatcgagctgggtatggtggatctcgctggggcggtcccagaaatgat
tctaatagatctgggtatggtggtggcggccgcactggtggatggggtagcagaactggt
gggtgggaccgtggaaaggagcgggaagtcaacccatttggagacgatgatgatgcagaa
cgtacctttaatgagccagaaaacactggaattaactttgatgcctatgaagatattcca
gtggagacaagtggtgataatgtgccaccacctgtgaacacatttgctgagattgacttg
ggtgaagcacttaatcaaaatattcgaaggtgcaagtatgtgaaaccaacacctgtgcag
cggcatgccattccaatatcccttgcagggcgagacttgatggcatgtgcccaaactggt
tctggcaagacagctgctttctgttttcctattatcagtggaattatgaagggtcaaggt
gctcagagaccgcctcgaggagcacgcacagtgtatccatttgctcttattctctctcca
actagggagctctcaatccaaatacatgaggaagctaggaaattttcatatcaaacgggt
gttagggtggttgttgcatacggaggagcgccaattaaccaacagctgcgggacctggag
agaggtgttgatatccttgtggctactcctggaagattggtagatttgctagagagggct
agagtttcattacagatgattaggtatttagccttagatgaggctgatcgaatgctggat
atgggttttgagcctcaaataaggaaaattgtggaacaaatggacatgcctccacaaggt
gtacgacagactatgttgttcagtgccacttttcctaaagaaatacagagattggcctct
gattttctttcaaattatgtgtttctggctgttgggagagtgggttccagtactgactta
attgtccaaagagttgaatttgttcttgagtctgacaaaagaagtcatcttatggacctt
cttcatgcacagagggctaatggtgtacagggcaagcaagctctaacactagtctttgtg
gagacaaagaagggtgcggatgcactagagcactggttgtgtattaatggttttcctgca
actactattcatggtgacagaacacaactggaaagagagcaagcattgaggtcttttaaa
agtggaaacaccccaattttggttgcaactgatgtggctgcacgtgggcttgacattccc
catgttgcacatgtggtcaactttgatcttccaaatgacattgatgattatgtccatcgt
atcggaaggacagggagagctgggaaaagtggtttggctactgctttctttaatgacaac
aactcatcacttgctaaggctttagctgaactgatgcaagaatcaaatcaagaagtacct
gcttggctatctcggtatgcagcacgatcttattatggaggaaggaagggtcgttctggg
ggaggccggtttggaggccgtgacttccgaagggattcctctttcaataggggcggttct
gactactacagtggaggcaatagcgctggcggaggatatggggggtattctggtggatat
agtggaggatatggtcctggagtgaccagtgcatgggactaa
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