Ziziphus jujuba (Chinese jujube): 107415200
Help
Entry
107415200 CDS
T04794
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107415200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zju03021
]
107415200
03019 Messenger RNA biogenesis [BR:
zju03019
]
107415200
Transcription machinery [BR:
zju03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107415200
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107415200
U7-dependent histone pre-mRNA processing factors
107415200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
107415200
NCBI-ProteinID:
XP_015878973
UniProt:
A0A6P3ZH87
LinkDB
All DBs
Position
4:complement(join(32810847..32812481,32812921..32813070,32813153..32813198,32813336..32813433,32813536..32813685))
Genome browser
AA seq
692 aa
AA seq
DB search
MASTGQPPSLKRRDSSVTREEDKLVVTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYS
GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLT
DYVKVSKVSVEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHIREKRFTDVIHS
TIAQGGRVLIPAFALGRAQELLLILDEYWSNHPELQNIPIYYASPLAKRCLSVYETYTLS
MNDRIRNAKSNPFIFKYISPLKSIENFKDVGPSVVMASPSGLQSGLSRQLFDMWCSDKKN
ACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAALNMQVHYISFSAHADSAQTSAFLEELG
PPNIILVHGEANEMGRLKQKLVTQFADRSTKILTPRNCQSVEMYFNSQKMAKAIGKLAEK
TPEVGEVVSGLLVKKGFSYQIMAPDDLHVFSQLSTANITQRITIPYHTAFSVIKQRLKQI
YESVESSADEESGVPTVRVHDQVTVKHESDSHISLHWTSDPISDMVSDSIVALVLNINRE
VPKVVVESEDIKTEEENEKKTEKVIHALLVSLFGDVKFGENGKLVISVDGNVAQLDKQSG
DVESENEGLKERVRTAFRRIQSAMKPIPLSAS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaggacaaccaccatctcttaagcgaagagattcatctgtgacaagagaa
gaggataaacttgtagtaactcccttaggggctggtaatgaagttggccgttcttgtgtg
tacatgtcctacaaaggaaaaactgtattgtttgattgtggaattcatccagcttactca
ggcatggctgctttgccatactttgatgagattgatccttcaacaattgatgtccttctc
atcacgcattttcacttggatcatgctgcatccttgccttatttcctggagaagaccaca
ttcagaggccgtgtttttatgacttatgcaacaaaggctatctacaagttgcttttaaca
gattatgtaaaagtgagcaaagtttctgttgaagatatgttgtttgatgagcaggacata
aatcgctccatggataagattgaggtcattgattttcatcaaacagttgaggtgaatggc
attcggttttggtgctacactgctggtcatgtccttggagctgcaatgtttatggttgac
atagctggtgttcgagtcctctacactggagactattcacgcgaggaagaccgacatctc
cgtgctgctgagaccccacagttctctcctgatgtgtgcataattgaatctacttatgga
gtccagcaccatcaacctaggcatatccgagagaagcgcttcactgatgttatacactca
accattgctcaagggggtcgtgtcttaattcctgcttttgcccttggtcgtgcccaagaa
ctcctcctcattcttgatgagtattggtcaaaccatcctgagctccaaaacattcccata
tactatgcttctccccttgcaaaaagatgtttgtctgtttatgagacatacaccctttcc
atgaatgataggatccgaaatgcaaagtcaaatccatttatcttcaagtacatatctcca
ttgaagagcattgagaatttcaaagatgttggtccatcagtagtaatggcaagtccgagt
gggcttcaaagtgggctgtcaaggcaactctttgatatgtggtgctctgataagaaaaat
gcctgtgttattcccggttatgtggttgaagggacactggcaaaaaccataattaatgaa
cctaaagaagttaccctcatgaatggactcactgctgctcttaacatgcaggtccactac
atctcattctctgcccatgcagactctgcacagacaagtgccttcttggaagagctgggc
cctcctaacataattcttgttcatggagaagctaatgagatggggaggctcaaacagaag
ctcgtgactcaatttgctgatcgtagtaccaaaatcctcactccgaggaattgtcagtct
gttgaaatgtatttcaattcccaaaaaatggctaaagcaattggaaagctggctgagaag
accccagaagttggtgaagttgtcagtggtttgctggtaaagaaaggcttcagttatcaa
ataatggctcctgatgacctccatgtcttctcacagctatcaacagcaaatattactcaa
aggattactatcccataccatactgctttcagtgtgataaagcaacgacttaagcagata
tatgagagtgtagagtcttcagcagatgaggagtctggtgttccaactgtgagagtgcat
gatcaggtcacagtgaagcatgagtcagatagtcacatttctctgcattggacgtcagat
cctataagtgacatggtctcagactccattgttgctctggttttaaacatcaacagggaa
gtcccgaaggtagttgttgaatcagaagatataaagactgaggaagagaatgagaaaaag
acggagaaggtaattcatgcacttcttgtttcactctttggagatgtgaagttcggagaa
aatgggaaactggtgattagtgttgatgggaatgtcgcacagcttgataaacagagtggt
gatgttgaaagtgaaaatgaaggtctcaaggaaagagtgaggacagcattccgccgaatc
caaagtgctatgaagccgatccctctttccgcatcttag
DBGET
integrated database retrieval system
