Ziziphus jujuba (Chinese jujube): 107415545
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Entry
107415545 CDS
T04794
Name
(RefSeq) protein CLP1 homolog isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107415545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107415545
Enzymes [BR:
zju01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
107415545
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107415545
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
DUF1611
FtsK_SpoIIIE
ATP_bind_1
AAA_29
ABC_tran
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
107415545
NCBI-ProteinID:
XP_015879368
UniProt:
A0A6P3ZKF2
LinkDB
All DBs
Position
4:complement(join(30500484..30500571,30500655..30500699,30500943..30501178,30502030..30502167,30502905..30502961,30503061..30503199,30503333..30503574,30504093..30504170,30504256..30504324,30504401..30504631))
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AA seq
440 aa
AA seq
DB search
MAYGGSAAGAPVAMAGVSTSAASTIRQVKLERESELRIEVANDTPLKLRLVTGTAEIFGT
ELPPEIWLTFPPRLKFAVFTWYGATIELDGTTETDYTADETPMISYVNVHAVLEGRRNRA
KASSSEGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATP
IEMPIDPVEGIPLEIPLVYFYGHTTPSNNVDLYKVLVKELSQMLERQFAGNAESRAAGMV
INTMGWIEGVGYELLLHAIDTFNANVVLVLGQEKLWSMLKDVLRNKQPNVDVVKLQRSGG
VVSRNAKFRQKARSHRIREYFYGLANDLSPHSNIANFSDLSVYRIGGGPQAPRSALPIGA
EPAADPTRLVHVNINRDLLHLVLAVSFAKEPEQIISSNVAGFIYVTDIDIQRKKITYLAP
SAGELPSKFLIVGTLTWLET
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcatacggcggttcggctgctggagctccagtagcaatggcgggggtttcgacatcg
gcagcatcgacgattaggcaggtgaaattggagagagagagcgagcttcgaatcgaagta
gccaacgacacgcctctcaagctacgcctcgttactggtacggctgagattttcggcacc
gagctccctcctgaaatttggttaaccttccctccgaggctcaagttcgctgtttttact
tggtatggagctacaatcgaattggatggcactaccgaaacggactacactgcagatgag
acgcccatgattagctacgtcaatgtgcacgccgtactggaaggtaggagaaaccgtgca
aaagcttcatcctctgagggtcctagggtgattgttgtgggacctacagattctggaaag
agtaccttgtcaagaatgcttcttagctgggcagctaaacagggttggaaacctactttt
gtggacttggatattgggcaaggatcaataacaattccgggatgcattgcagctacccct
attgaaatgcctattgatcctgtggaaggaattcctctagagattcccctcgtttacttt
tatgggcacacaactcctagtaacaatgtagatctctataaagtgcttgtaaaggagctt
tcacaaatgttagagagacaatttgctggtaatgctgaatctcgagctgcaggcatggtt
atcaacacaatgggatggatagaaggtgtaggctatgagttgcttcttcatgcaattgat
acattcaatgccaatgttgtcttggttttgggtcaggaaaagctttggagcatgctcaaa
gatgttctgaggaacaagcagccaaacgtggacgttgtgaaacttcaaaggtcaggtggt
gttgtatccaggaatgccaaattcagacagaaggccaggagtcataggataagggaatat
ttttacggccttgcaaatgatctctccccacattctaatatcgcaaatttcagtgattta
tctgtctatcgaattggtggcgggccacaggcaccacgttcagcactgccaattggcgca
gagcctgcggcagaccctacaagattagtgcatgtgaatattaaccgggatttgctccat
ttagtccttgctgtttcatttgctaaagaacctgagcaaattatttcaagtaacgtagct
gggtttatatatgtcacagacattgacattcagaggaagaaaataacttatcttgcacca
tccgccggtgaacttcccagcaaatttttgatcgtggggactttgacatggctcgaaaca
tga
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