KEGG   Ziziphus jujuba (Chinese jujube): 107416626
Entry
107416626         CDS       T04794                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107416626
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107416626
   03012 Translation factors [BR:zju03012]
    107416626
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107416626
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     107416626
Translation factors [BR:zju03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    107416626
SSDB
Motif
Pfam: Helicase_C DEAD R3H HA2_C OB_NTP_bind HA2_N Ank_2 nSTAND3 Ank_5 ATPase AAA_19 AAA_22 ResIII AAA_16 T2SSE AAA_7 AAA_25 Ank Beta-prop_SPT8
Other DBs
NCBI-GeneID: 107416626
NCBI-ProteinID: XP_015880627
UniProt: A0A6P3ZKM6
LinkDB
Position
4:complement(join(7769563..7770018,7770143..7771273,7772067..7773071,7773157..7773246,7773377..7773410,7773698..7773750,7774761..7774913,7775544..7775602,7775698..7775788,7777115..7777159,7777383..7777457,7777568..7777871,7778044..7778134,7778647..7778752))
AA seq 1230 aa
MAKKKQKYPKVPKISEDTRIRITQMLEKFRESSDEVFAFEPNLSKRDRAAVHLLCRKMGM
KSKSTGGSKQRHVRVYKVRKKVTESQNLYNLSFSDEAKEVLRNLFTHYPPDDGEEGKEMD
GKNGEKVYDLYQKRDGMFCKPLMSKAEIAKKLESLASRMENVLYLRQINEVRSKLPIASF
RDVITSTVESHQVVLVSGETGCGKTTQVPQYLLDYMWGKGKACKIVCTQPRRISALSVAE
RISNERGQDVGDDVGYKIRLESKGGRHSSIVFCTNGVLLRVLIAKGAKAEVSKKHKKLDL
FDMTHIIVDEIHERDRFSDFMLAILRDMLPSYPHLRLILMSATLDAERFSQYFGGCPIIR
VPGFTYPVKTFYLEDVLSILRSPENNHLSNTMLSVPSEESKLTEEDKLALDEAIDLAWSN
DEFDPLLELVSSEGTPEVFNYQHSSSGLTALMVFARKGRVGDVCMLLSFGADCQLRAKDG
TTAMEGAERDGQLETAEILKRHMEIHFSNSMEEQKLLDKYFAEINPEFIDDVLIEQLLAK
ICTDSEDGAILVFLPGWDDIHKIRERLLMNPLFNNTSKFVIISLHSKVPSAEQKKAFKQP
PHGCRKIVLSTNIAETAVTIDDVVYVIDTGRMKEKSYDPYNNVSTLQSSWVSKASAKQRE
GRAGRCQPGICYHLYSKLRAASFPEFQVPEIKRMPIEELCLQVKLVDPDCKIEDFLQKTM
DPPVFESIRNAVVVLQDIGALSLDEKLTELGEKLGSLPVHPLTSKMLFFAILVNCLDPAL
TLACAADYRDPFTLPMLPNERKKAAAAKSELALLFGGHSDQLAVIAAFECWKNAKERGQE
ARFCSQYFVSSSTMHMLSGMRKQLQTELIRLGFISGDVSSYSLNASDSGILHAVLVAGLY
PMVGRLLLPNKYMKRLVIETDSGDKVRLHHQSTISKLPFNKTDSHALVVFDEITRGDGGM
NIRNCTLIGPLPLLLFSTEIAVAPTTNGDDDNEDYNNDDNDDDDDDDDGSDDNNEDGSDE
DAMDMDNKSAEKHQEKIMSSPDNTVVVIVDRWLRFGSTALDVAQIYCLRERLAAAILFKV
THPTEALPPLLAASAYAIALILSYDGMSGMYLPSESLDSKMSKKDNEIDKSEGVRASPHQ
SSMAYLSSLLHRGKYQNTVPHHVTTRSQSQAIWKDPLSYNGQVSVNQAYVNTHGMPLSGN
LSFGGHGRGSNGRFVPGDSHKRLRGNGAGQ
NT seq 3693 nt   +upstreamnt  +downstreamnt
atggcaaagaaaaagcagaagtaccctaaggtccctaaaatttccgaagacacgaggatc
cgcataacccagatgctggaaaagttccgtgagtccagtgatgaagtgttcgcatttgag
cccaacctatcaaaacgtgatcgtgctgctgtgcatttactttgtagaaaaatgggtatg
aaatcaaagagtacagggggttcaaagcaaaggcatgtaagagtctacaaagttagaaag
aaggtcacggagtcgcaaaatctctataatctctctttttctgatgaggcaaaagaggta
ttacggaatttatttacgcattacccgcctgatgatggagaagagggcaaagaaatggat
ggaaaaaatggtgaaaaggtttatgatttataccagaagagagatggtatgttctgtaag
cccttaatgagcaaggcagaaattgcaaagaaattggaatcacttgcttctagaatggag
aacgttttatatttgagacagattaatgaagtaaggtctaagcttccaattgcgtccttt
agggatgtgattacatcaacagttgaatctcaccaggtagtacttgtatctggtgagact
ggatgcggaaagaccacgcaggtcccacaatatcttttggactatatgtggggtaagggt
aaggcatgtaagatagtgtgtacacaacctcgacgtatctcagccttatcagttgctgag
aggatctctaatgaaagaggacaggacgttggagatgatgttggatacaagatacggttg
gagagtaaaggtgggagacactcgtcaattgtgttctgcacaaatggggttctgttgagg
gtgctaattgctaagggtgccaaggcagaagtatccaagaaacataaaaaacttgatctt
tttgacatgactcacattatagtggatgagattcatgaaagggatcgtttctctgatttc
atgcttgcaattttaagagacatgcttccttcatatcctcatctacgtctgatactaatg
agtgcaactcttgatgctgagcggttttcacaatattttggtggctgccctattatccgt
gtccctgggttcacttatcctgtcaaaactttctatttggaggatgtactttctatcctt
agatcaccagaaaataatcaccttagtaatactatgttatctgttccaagtgaagaatct
aagttaacagaggaagataaacttgctttagatgaagctattgatttggcatggtcaaat
gatgagtttgatcctcttctagaattggtttcgtctgagggaacaccagaagtatttaat
taccagcattcatcatctggacttacagcattaatggtgtttgctcggaagggcagagtt
ggagatgtttgcatgcttctatcttttggtgcagactgccagttgcgggccaaggatggg
acaactgcaatggagggggctgaacgggatggccagctagaaactgctgaaatattgaaa
agacatatggaaattcacttttctaactccatggaagaacaaaagttacttgataaatat
tttgcagagatcaatcctgaattcattgatgatgttcttatagagcagttattagcgaaa
atatgtactgattcggaagatggagctatccttgttttcctcccagggtgggatgatata
cataaaattcgtgagagattacttatgaacccactttttaacaatacatccaaatttgtc
ataatatcgcttcattctaaggttccatcagcagagcaaaagaaggctttcaagcagcca
cctcatggctgccgcaaaattgttctttctaccaacattgcagaaactgctgttactatt
gatgatgttgtttatgttatagacactggtcgaatgaaagaaaaaagctatgatccttat
aataatgtatcaactcttcaatcttcttgggtctcaaaggctagtgccaagcagcgagag
ggacgtgcaggtcgctgtcagcctggaatttgttatcatctttattccaaacttcgagct
gcctcttttccagaatttcaagttcctgaaattaagaggatgcctattgaggaactttgt
ctgcaggtgaagttagttgatccagattgcaagatagaagatttcttgcagaagacaatg
gatccaccagtttttgagtctattcgaaatgcagttgttgttcttcaagatattggggct
ttgtctcttgatgaaaaacttacagaacttggggagaagctgggttccctgcctgttcat
ccattaacgagcaaaatgcttttctttgccatattagtgaattgccttgatcctgcattg
actctggcatgtgctgctgactacagagatccatttactcttcccatgttgcctaatgaa
aggaaaaaggcagctgccgctaaatcagagcttgctttattgtttggtgggcacagtgat
cagctagcagttatagctgcatttgagtgctggaagaatgcaaaggaaaggggccaagag
gcacgtttttgttctcagtattttgtctcttctagtaccatgcatatgttgtctggtatg
cgaaagcagctccagacggaactcatacgtcttggatttatttctggggatgtttccagt
tatagtttgaatgcaagtgattcgggtatactccatgcagtcctagtagctggtttatac
ccaatggttgggaggttgcttttacctaacaaatatatgaaacgtcttgttatagagact
gatagtggtgataaagttcgtttgcaccatcaatccactatttctaagttgccgttcaat
aaaactgattctcatgctttagttgtatttgatgagattacacgtggagatgggggtatg
aacatcaggaactgtacacttattgggccactcccattattattgttttcaacagaaatt
gctgttgccccaactacaaatggtgatgatgataatgaagattacaacaacgatgacaat
gatgatgatgatgatgatgatgatggaagtgatgataacaatgaagatggaagtgatgaa
gatgcaatggacatggataataagtcagctgaaaaacatcaggagaagattatgtcatct
cctgataatacagttgtagtaattgtggataggtggcttcgttttgggtcaaccgcacta
gatgttgctcagatttattgcttgagagagcgattagccgcagcaatcttgttcaaagta
acacatccaacggaagctctgcctccacttcttgcggcctccgcatacgctatagccctt
attctatcttatgacggtatgtctgggatgtatttgccctcggaatctttggattctaag
atgtcaaagaaagataatgagattgacaagtccgaaggagtaagggctagtcctcatcag
agttcaatggcctacctcagctcacttctgcaccgtggaaaataccaaaacactgttcct
catcacgtcacaactagaagccaaagccaagcaatatggaaggacccattgagttacaat
ggtcaggtttcggttaatcaagcctatgttaacacacatgggatgcctctatcaggaaac
ttgagttttggagggcatggaaggggttctaatggacgatttgttcctggagactcacat
aagcggttgcgaggaaatggtgctgggcaatga

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