KEGG   Ziziphus jujuba (Chinese jujube): 107417661
Entry
107417661         CDS       T04794                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107417661
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107417661
   03041 Spliceosome [BR:zju03041]
    107417661
   03009 Ribosome biogenesis [BR:zju03009]
    107417661
   03016 Transfer RNA biogenesis [BR:zju03016]
    107417661
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107417661
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     107417661
Spliceosome [BR:zju03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    107417661
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    107417661
Ribosome biogenesis [BR:zju03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    107417661
Transfer RNA biogenesis [BR:zju03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    107417661
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C DEXQc_Suv3 ResIII nSTAND3 FlxA Death_3
Other DBs
NCBI-GeneID: 107417661
NCBI-ProteinID: XP_015881765
UniProt: A0A6P6G6S7
LinkDB
Position
2:complement(join(1008107..1008217,1008353..1008445,1008577..1008672,1008762..1008910,1009227..1009380,1010007..1010099,1010189..1010278,1010816..1010974,1011077..1011286,1011450..1011566,1011646..1011717,1011804..1011971,1012300..1012368,1012489..1012593,1012702..1013016,1013455..1014423))
AA seq 989 aa
MGESPTPGKRKEPEQSEVTESTTEESPPKRRNLTRTCVHEVAVPSGYTPTKDESIHGTLA
NPVYTGTMAKTYNFTLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDGQR
VIYTSPLKALSNQKYRELFEEFKDVGLMTGDVTLSPNATCLVMTTEILRGMLYRGSEVLK
EVGWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICHLHKQPC
HVVYTDFRPTPLQHYVFPMGGNGLYLVVDETEQFREDNFVKLQDSFSKQRMDGANRSANG
KASGRLAKGGAASGPSDVFKIVKMITERKFQPVIIFSFSRRECEQHAMSVAKLDFNTKEE
KDNVEHVFRNAIECLKEEDRDLPAIELMLPLLKQGIAVHHSGLLPVIKELVELLFQEGLV
KALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICI
IMIDEKMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQY
EKALPDIGKKVSKLEQEAVMLDASGEAAVAEYHNIKLEIGLLEKKMMSEIMRPERVLYFL
QPGRLVRVREGGTDWGWGVVVNVVKKPSAGLGTLSSRGGAYIVDTLLQCSPVSSENASRP
KPCPPRPGEKGEMHVVPVQLSLIAALSRLRISIPPDLRPVEARQSILLALQELGTRFSQG
FPKLNPVTDMSIEDPEIVELVNQIEELERKLYAHPLHKSQDVDQIRSFQRKAEVNHQIQQ
LKSKMRDSQLQKFRDELKNRSRVLKKLGHVDADGVVQLKGRAACLIDTGDELLVTELMFN
GTFNDLDHHQIAALASCFIPGDKSSEQPQLRTELGRPLQQLQDSARRIAEIQHECKLEVN
IDEYVESTVRPFLMDVIYCWSKGANFADVIQKTDIFEGSIIRSARRLDEFLNQLRAAAQA
VGEVALENKFAAASESIHRGIMFANSLYL
NT seq 2970 nt   +upstreamnt  +downstreamnt
atgggagaatctccaacacctgggaaacgtaaagagcctgaacagtcggaggttactgaa
agtaccaccgaagaatctccaccaaaacgacgcaatttgactcgtacctgtgttcacgag
gttgcagttcctagtgggtacactcccaccaaggatgaatctattcatggaactctggca
aatccagtgtatactggaaccatggccaagacatacaattttacgctggacccttttcag
caggtctctgtggcgtgcttggagcgcaatgagtccgttctggtctccgcgcatacttca
gctggtaaaactgccgtcgctgagtatgcaattgctatggcttttagagatggacagagg
gttatatatacttcacctttgaaggctttgagcaatcagaagtacagagaactctttgaa
gagtttaaagatgttgggttgatgactggtgatgttacactctctcctaatgctacttgt
ttggtaatgaccacggagattctgaggggaatgctttatagaggttctgaggtcctcaag
gaagttggctgggttatttttgatgaaattcattatatgaaggatcgtgaaagaggggtt
gtttgggaagagagtattatatttttgccaccggcgattaaaatggtttttctttcggca
acaatgtcaaatgccactgagtttgcagagtggatttgtcatttgcacaaacagccatgt
catgttgtctacacagatttccgacccactccactgcagcattatgtttttcccatgggt
gggaatggtttatatcttgtagttgacgagaccgaacagtttagggaggacaattttgtg
aagctgcaggattctttctcaaagcaaagaatggatggtgctaacaggagtgctaatggc
aaagcaagtgggagacttgcaaaaggcggggctgcatcagggccttctgatgtattcaaa
attgtgaagatgattacagagagaaaattccagccggttattatttttagcttcagtaga
agagagtgtgaacagcatgcaatgtctgtggccaaacttgattttaacaccaaagaagaa
aaggataacgtagaacatgttttccgtaatgcaatagaatgtttgaaagaggaagacaga
gatttgcctgccattgagttgatgttgccactacttaagcaaggcattgctgttcatcat
tctggcctgcttcctgtcatcaaggaactggtagagcttcttttccaggaaggccttgta
aaggcactgtttgctacagaaacatttgctatgggtttgaatatgcctgcgaaaactgtt
gttttcacggctgtgaagaagtgggatggtgatagtcatcggtacattggatcgggtgag
tatatccagatgagtggaagggctggccgtcgtgggaaagatgatcgtggtatttgtatc
ataatgattgatgagaagatggagatgaatacactcaaggacatggttttgggtaaacca
gctcctttagtcagtacctttagacttagctactactcaattttgaatttgatgagccgt
gcagaaggccagttcaccgctgaacatgtaataaagaattcattccaccagttccagtat
gagaaggctttacctgatataggaaaaaaggtttcaaagcttgagcaggaagctgtaatg
cttgatgcatcaggagaggctgcagtcgctgagtatcataacataaaacttgagataggc
ctacttgaaaagaagatgatgtcagaaataatgaggcctgaaagagttttatattttctt
caacctggtcggttggtcagagtacgagaaggtggaacagactggggttggggagtggta
gttaatgtcgtgaaaaagccatcagcagggttaggcacgttgtcttcgcgtggtggtgct
tatattgttgataccttgctccaatgctctcctgtttcaagtgagaatgcttcacggcca
aaaccatgtccacctcgtccaggggaaaagggtgaaatgcatgtggtccctgttcagttg
tccttaattgctgccctaagcagactcaggatatctattcctcccgatctgcggcctgtt
gaggcgaggcaaagtattctgcttgcattacaggagctgggaactcgtttttcccaaggt
tttccaaagttgaatcctgtaacggacatgagcattgaagatcctgaaattgttgagttg
gtcaatcaaattgaggaacttgaaagaaagttatatgctcatccactgcataagtctcaa
gatgtggatcaaattagaagttttcagaggaaggcagaagtgaatcatcaaatacaacaa
cttaagtccaaaatgcgtgattcccagcttcaaaaattccgtgacgaacttaaaaaccgg
tcacgggtcttgaaaaagcttggtcatgttgatgctgatggtgttgtacaattaaaggga
cgagcagcatgcttgatagacacaggggatgagctccttgttactgagctgatgttcaat
ggtacgttcaatgatcttgatcatcaccaaattgcagctcttgctagttgtttcattcca
ggagataaatcaagtgagcagccacaactgaggacagagcttggtagaccattacagcaa
ctccaagacagtgcaagaagaatagcagagatacaacatgaatgtaagttagaggtaaat
atcgacgagtatgtggaatcaacagtaaggccattcctgatggatgtgatatattgttgg
tcaaagggtgcaaattttgctgatgttatacaaaagactgatatctttgagggcagtatt
ataagaagtgctagaagacttgatgagtttctgaatcagttgcgtgctgctgctcaagca
gtgggagaagttgctttagaaaacaagtttgctgcagcaagtgaaagcatccaccggggt
ataatgtttgcaaattccctttatctgtaa

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