Ziziphus jujuba (Chinese jujube): 107417960
Help
Entry
107417960 CDS
T04794
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107417960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107417960
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107417960
mRNA degradation factors
5'-3' decay
Decapping complex
107417960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
107417960
NCBI-ProteinID:
XP_048330311
LinkDB
All DBs
Position
2:join(8158445..8158526,8158940..8159085,8159719..8159775,8160238..8160301,8160383..8162529)
Genome browser
AA seq
831 aa
AA seq
DB search
MEGFESGSGIHEAPNPQDLKQFGDDSTGDAVFDASQYAFFGKDVLEEVELGGLEEEEEDF
PAAGFEEEEFLYEPEEGEVLRSLSDIDDLASTFSKLNKNVSGPRGTGVIGDGGSRESSSA
AEWAQDEFPNWVDHQIYDAESTLEGKRWSSQPFSSAQLMESKTLYRTSSYPEQQQQQQQQ
QPPQNHHPHFASEPILVPKSSFPSYPTPGGRSQHASPNHHSGHLNVPYHVGGHQGGLSSP
NLTPFSNSQLQLAGLPHSPHFGGNLPQLNSGITVNSRPPNQWANQAGMYPGDHPTLLNNL
LQQQLSHQNGIMPPQLMTQQQQQQQQHRMHHPVQPSFNHLPGMQSQLFAPHLPPSPPLMG
KLETMLGLADLRDQRSRFGQKGRLNPRFNLQGSDTSNQKSDGGWPQFRSKYMSAEEIEGI
LRMQLAATHSNDPYVDDYYHQACLAKKSAGAKLRHHFCPTHLRDLPPRARANSEPHAFLQ
VDALGRIPFSSIRRPRPLLEVDPPNSSSPGSTEQKASEKPLEQEPMLAARVTIEDGLCLL
LDVDDIDRFLQFSQLQDGGTQLRRRRQVLLEGLAASLQLADPLGKNGQTVGLVPKDDLVF
LRLVSLPKGRKLLARYLQLLFPASELMRIVCMAIFRHLRFLFGTLPSDPGSAETTNNLAR
VVSLCVHGMDLGALSCCLAAVVCSSEQPPLRPLGSSAGDGASLILKSVLERATELLTDPH
VASNYNISNRELWQGSFNEFFGLLTKYCVNKYDSVMQSLLIQGNITVIGTDAARAITCEM
PVELLRASLPHTNEHQRQLLLDFTRRSMTVSGSDSHSGGNGGQINSESVLS
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggaagggtttgagagtgggagtggtattcacgaagctcccaatcctcaagatctcaag
caattcggagatgattccacaggagatgctgtatttgatgcatctcaatatgcattcttt
ggtaaagacgtcttagaagaagttgaattgggtgggttggaagaagaagaggaggatttt
cccgcagctggatttgaagaagaggagtttctttatgagccagaagagggtgaggtttta
agatctctttctgatattgatgatctggccagcactttttcaaagttgaacaagaatgtc
agtggaccaagaggcacaggtgtaattggagatgggggatccagagaaagttcatctgct
gcagaatgggcacaagatgagttccctaactgggttgaccatcaaatatatgatgctgag
agcactctagaaggaaagcgatggtcttcacagccattttcttctgctcagctgatggaa
tcaaagactttatacagaacatcttcataccccgaacaacagcagcagcagcagcagcag
cagccgccacaaaaccaccacccccactttgccagtgaaccaattttggtaccaaaatct
tcttttccttcataccccacgccaggtggcagatcccagcatgcttcaccaaaccaccat
tctggacatctgaatgttccatatcacgttggaggacaccagggtggattatcttctcca
aacctcactcccttctctaattctcagcttcaattggctgggttacctcattcacctcat
tttggtggaaatttaccacagcttaattctggtattactgtgaacagtcgacctccaaat
caatgggccaaccaggctggcatgtatcctggagatcaccctaccttattgaataattta
ttgcagcaacaattgtctcatcaaaatggtataatgcctccacaattaatgacacagcaa
cagcaacagcaacagcaacatagaatgcaccatccagtccagccatcatttaatcatttg
ccagggatgcagtcccaactttttgctccccatcttcctccatcaccacccttaatgggc
aagcttgaaacaatgcttggtctggctgatcttagagatcaacggtcaagatttggtcag
aaaggtaggctgaatcctcgttttaatctgcagggttctgatactagcaatcagaagagt
gatggtgggtggccacagtttaggtcaaagtacatgtcagctgaggaaattgagggtatt
ctccgaatgcaacttgctgcaacacacagtaatgacccctatgtagatgattattaccat
caggcttgtctcgcaaaaaaatcagctggggcaaagctgaggcatcatttttgcccgact
cacttaagggatctccctccccgagcacgtgccaattctgaaccccatgcttttctccag
gttgatgctcttgggaggatacccttctcttcaatccgtagaccacgtcctctccttgaa
gtggaccctccaaattcatccagtcctggaagcaccgaacagaaggcttctgagaagccc
ttagaacaggagccaatgcttgctgctagagttacaattgaggatgggctttgtcttctt
cttgatgttgatgatattgaccgttttctacaattcagtcaactacaggatggtggaacc
cagttgagacgtagacggcaggtcctactggaaggacttgcagcgtcacttcagttggct
gacccacttggcaaaaatggccagacagttgggcttgttccaaaggatgatcttgtgttc
ttaaggttagtctctctacctaagggacggaagctcctcgcaaggtatctacagcttctt
tttcctgccagtgagctcatgcgaattgtttgcatggccattttccgtcatttaaggttc
ctgtttggtaccctaccctctgatccaggatcagcagaaactacaaacaaccttgcaagg
gtagtttcattgtgtgttcatggtatggatcttggtgcacttagttgctgtcttgcagca
gtcgtttgttcatcggagcagcccccccttcgtccccttggcagctctgcaggagatggg
gcttctctcattctaaagtcagttcttgaaagggcaactgaacttttgacagatcctcat
gttgctagcaactacaatatatctaatcgggaactttggcaggggtccttcaatgaattc
tttggtcttttaaccaaatattgtgtaaataaatatgacagtgtcatgcagtccttgctg
atccagggcaatattaccgttattggaacagatgcagcaagagctattacatgtgaaatg
ccagttgagcttttacgcgcaagtcttcctcacaccaatgagcatcagaggcagcttttg
ctggattttacacggcggtccatgactgtaagtggttctgatagtcacagtggagggaat
ggtggtcagatcaattccgaatcagtactgagctga
DBGET
integrated database retrieval system
